Closed LauriKurki closed 1 year ago
Wiki updated at https://github.com/Probe-Particle/PPSTM/wiki#relaxed-scan.
This page also needs updates https://github.com/Probe-Particle/PPSTM/wiki/Prepare-for-the-flexible-tip-simulations and it still refers to the nanosurf pages for creating the probe positions which we probably don't want?
I also removed the scripts for installing and uninstalling PPAFM from the repo and updated the README, as the installation is now done with pip.
Yes, please update the other part of wiki as well. Thank you!
Yes, the only thing not working at the moment is the FePc test for two reasons.
*.in is not currently supported as an input, but should be soon (https://github.com/Probe-Particle/ppafm/issues/177 and https://github.com/Probe-Particle/ppafm/issues/39)
ppafm-relaxed-scan --pos -f npy --vib 3
causes a seg fault in PPAFM
Yes, I know that one, I have tried to looked into it, but it is pretty problematic in C++ and the question is if there is a market for it ....
Resolves #14.
Updated the scripts in the repository to use the new ppafm.io module. Also updated the tests to use the new ppafm cli-commands, e.g.
ppafm-generate-ljff
. Tests for FePc_Au still fail asppafm-relaxed-scan --pos -f npy --vib 3
causes a seg fault but otherwise all tests are working.We should also update the documentation for creating the force fields and relaxed probe particle paths. Now running PPSTM requires PPAFM(=<0.2.0a3) to be installed with
pip install ppafm=0.2.0a3
. Force fields are generated with e.g.