diazandr3s
commented
2 months ago Hi @suzhou-gumi,
I highly recommend you creating a Python virtual enviroment and installing the MONAI Label package
pip install -U monailabel
From the first print screen you've shared, I see you don't have a Python env activated.
Please follow these instructions: https://github.com/Project-MONAI/MONAILabel?tab=readme-ov-file#step-1-installation
Hello!
since i run monai label in Ubuntu 22.04, when run command 'monailabel --help', i see monailabel using wrong PYTHONPATH, so i echo the right PYTHONPATH in to .bashrc, after that , the PYTHONPATH has some prefix, it still wrong.
================================ Printing MONAI config...
MONAI version: 1.3.2 Numpy version: 1.26.4 Pytorch version: 2.4.0+cu121 MONAI flags: HAS_EXT = False, USE_COMPILED = False, USE_META_DICT = False MONAI rev id: 59a7211070538586369afd4a01eca0a7fe2e742e MONAI file: /home//.local/lib/python3.10/site-packages/monai/init.py
Optional dependencies: Pytorch Ignite version: 0.4.11 ITK version: 5.4.0 Nibabel version: 5.2.1 scikit-image version: 0.24.0 scipy version: 1.14.0 Pillow version: 10.4.0 Tensorboard version: 2.17.1 gdown version: 5.2.0 TorchVision version: 0.19.0+cu121 tqdm version: 4.66.5 lmdb version: 1.5.1 psutil version: 6.0.0 pandas version: 2.2.2 einops version: 0.7.0 transformers version: NOT INSTALLED or UNKNOWN VERSION. mlflow version: 2.15.1 pynrrd version: 1.0.0 clearml version: NOT INSTALLED or UNKNOWN VERSION.
For details about installing the optional dependencies, please visit: https://docs.monai.io/en/latest/installation.html#installing-the-recommended-dependencies
================================ Printing system config...
System: Linux Linux version: Ubuntu 22.04.4 LTS Platform: Linux-6.8.0-40-generic-x86_64-with-glibc2.35 Processor: x86_64 Machine: x86_64 Python version: 3.10.12 Process name: pt_main_thread Command: ['python3', '-c', 'import monai; monai.config.print_debug_info()'] Open files: [] Num physical CPUs: 6 Num logical CPUs: 12 Num usable CPUs: 12 CPU usage (%): [4.7, 4.4, 4.1, 3.8, 4.4, 3.5, 4.1, 3.8, 4.4, 3.8, 47.5, 50.2] CPU freq. (MHz): 952 Load avg. in last 1, 5, 15 mins (%): [3.4, 2.7, 2.5] Disk usage (%): 7.2 Avg. sensor temp. (Celsius): UNKNOWN for given OS Total physical memory (GB): 15.0 Available memory (GB): 10.5 Used memory (GB): 4.0
================================ Printing GPU config...
Num GPUs: 0 Has CUDA: False cuDNN enabled: True NVIDIA_TF32_OVERRIDE: None TORCH_ALLOW_TF32_CUBLAS_OVERRIDE: None cuDNN version: 90100
help someone can help me, thank you very much!