Przemol
commented
6 years ago Looks like SeqPlots cannot write files to your home directory - it can be due to your system security setup. Try to create a writable folder, e.g.on your desktop, note a path to it and try to run SeqPlots like this:
library(seplots)
run(root = 'C:/path/to/writable/directory')
Hello,
I'm trying to use seqplots but can't upload any .BED file apparently. Tried with two linked. Didn't work, but a .WIG file was successfully added. Formation_2018.zip
The errors i have : at webpage opening : "JavaScript error! Some elements might not work properly. Please reload the page." Start tutorial > New plot set >"Make sure you have tutorial data uploaded to SeqPlots!" there is no data to plot. If i try to add a .BED file : "File was not moved to final directory" Works well when adding a .wig file (attached)
Couldn't try to plot smthing as i don't have any feature file...
Thanks for reading ! Leo
Windows 10 x64 Java version : 1.8.0_171-b11
sessionInfo() R version 3.4.3 (2017-11-30) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale: [1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252 LC_MONETARY=French_France.1252 LC_NUMERIC=C LC_TIME=French_France.1252
attached base packages: [1] grid stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages: [1] BSgenome.Hsapiens.UCSC.hg19_1.4.0 RColorBrewer_1.1-2 fields_9.6 maps_3.3.0 spam_2.1-4
[6] dotCall64_0.9-5.2 plotrix_3.7 kohonen_3.0.4 BSgenome_1.46.0 Biostrings_2.46.0
[11] XVector_0.18.0 rtracklayer_1.38.3 GenomicRanges_1.30.3 GenomeInfoDb_1.14.0 IRanges_2.12.0
[16] S4Vectors_0.16.0 RSQLite_2.1.0 jsonlite_1.5 shiny_1.0.5 BiocGenerics_0.24.0
[21] seqplots_1.16.0
loaded via a namespace (and not attached): [1] Rcpp_0.12.16 lattice_0.20-35 Rsamtools_1.30.0 class_7.3-14 digest_0.6.15 mime_0.5
[7] R6_2.2.2 plyr_1.8.4 ggplot2_2.2.1 BiocInstaller_1.28.0 pillar_1.2.1 zlibbioc_1.24.0
[13] rlang_0.2.0 lazyeval_0.2.1 blob_1.1.1 Matrix_1.2-14 DT_0.4 BiocParallel_1.12.0
[19] stringr_1.3.0 htmlwidgets_1.0 RCurl_1.95-4.10 bit_1.1-12 munsell_0.4.3 DelayedArray_0.4.1
[25] compiler_3.4.3 httpuv_1.3.6.2 pkgconfig_2.0.1 htmltools_0.3.6 SummarizedExperiment_1.8.1 tibble_1.4.2
[31] gridExtra_2.3 GenomeInfoDbData_1.0.0 matrixStats_0.53.1 XML_3.98-1.10 GenomicAlignments_1.14.2 MASS_7.3-49
[37] bitops_1.0-6 xtable_1.8-2 gtable_0.2.0 DBI_0.8 magrittr_1.5 scales_0.5.0
[43] stringi_1.1.7 reshape2_1.4.3 tools_3.4.3 bit64_0.9-7 Biobase_2.38.0 crosstalk_1.0.0
[49] rsconnect_0.8.8 yaml_2.1.18 colorspace_1.3-2 memoise_1.1.0