:chart_with_upwards_trend:SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.
I have successfully uploaded my bigWig and bed data to SeqPlots. When click "new plot set", it just hangs there and reports "processing...". There is no error or warning info in the terminal window. Could you give me some clues? I have installed seqplots in R3.4 before. And now I moved to R 3.5 (a brand-new and not upgraded one) and installed seqplots within it. Will this cause problem?
Thanks.
My session info:
sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Hi, Przemol.
I have successfully uploaded my bigWig and bed data to SeqPlots. When click "new plot set", it just hangs there and reports "processing...". There is no error or warning info in the terminal window. Could you give me some clues? I have installed seqplots in R3.4 before. And now I moved to R 3.5 (a brand-new and not upgraded one) and installed seqplots within it. Will this cause problem? Thanks.
My session info:
Matrix products: default BLAS: /bioware/source/R-3.5.0/lib/libRblas.so LAPACK: /bioware/source/R-3.5.0/lib/libRlapack.so
locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages: [1] grid stats4 parallel stats graphics grDevices utils
[8] datasets methods base
other attached packages: [1] RColorBrewer_1.1-2 fields_9.6 maps_3.3.0
[4] spam_2.2-0 dotCall64_1.0-0 plotrix_3.7-4
[7] kohonen_3.0.6 BSgenome_1.48.0 Biostrings_2.48.0
[10] XVector_0.20.0 rtracklayer_1.40.6 GenomicRanges_1.32.7 [13] GenomeInfoDb_1.16.0 IRanges_2.14.12 S4Vectors_0.18.3
[16] RSQLite_2.1.1 jsonlite_1.5 shiny_1.1.0
[19] BiocGenerics_0.26.0 seqplots_1.19.3