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QIFEIDKN
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STAGATE
Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
MIT License
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Import STAGATE Error
#24
AIBio
opened
2 months ago
0
关于计算空间网络时出现------The graph contains 0 edges, 929 cells. 0.0000 neighbors per cell on average.
#23
JOB1225
opened
2 months ago
0
About trajectory analysis
#22
evenDDDDD
opened
1 year ago
0
`sparse_placeholder` is not compatible with eager execution.
#21
Gandalf-1127
opened
1 year ago
2
Question about how to get a finer spatial structure
#20
Changzhanhe
opened
1 year ago
0
Questions about UMAP visualization
#19
czwdcm
opened
1 year ago
0
I think this part in model.py is wrong.
#18
SanoKyohei
opened
1 year ago
1
about DLPFC 151508
#17
xiao-kong-long
closed
1 year ago
1
Severe batch effect after denoising.
#16
EddieLv
opened
1 year ago
5
How to select the best parameter?
#15
EddieLv
closed
1 year ago
2
error raised when denoising
#14
dhy2002
opened
1 year ago
1
problem in applying sc.pp.highly_variable_genes(adata, flavor="seurat_v3", n_top_genes=3000)
#13
xiao-kong-long
closed
1 year ago
2
Is there any tutorial of running the single-cell solution ST data?
#12
csqray
closed
1 year ago
3
About datasets used in your paper: How to get Layer structure labels of STARmap dataset?
#11
BinDuan
opened
2 years ago
6
The `151676` cluster result in paper cannot be reproduced! My reproducation tf result is `0.51` with tuning and pytorch result is `0.29`.
#10
forechoandlook
closed
2 years ago
4
Problems in PAGA Analysis
#9
jingjingyac
closed
1 year ago
3
Windows or Linux ?
#8
xiao-kong-long
closed
1 year ago
2
the version of rpy2
#7
xiao-kong-long
closed
8 months ago
5
The ARI result of DLPFC 151676 dataset
#6
HappyLife-together
opened
2 years ago
9
Problem in env's building and skmisc
#5
xiao-kong-long
opened
2 years ago
1
How to use the software to calculate the spatial correlation of any two genes（using Moran's I ）
#4
hzongyao
closed
1 year ago
1
A Promlem when read_visium
#3
xiao-kong-long
closed
1 year ago
4
Parameter settings
#2
Yao-14
closed
1 year ago
1
Tensorflow version
#1
Yao-14
closed
1 year ago
3