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R-ODAF
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R-ODAF_Health_Canada
Health Canada's version of the R-ODAF pipeline, which includes additional visualization and pipelining features
MIT License
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replace dockerfile with contents of dockerfile.new
#250
LMBradford
closed
3 weeks ago
0
fix QC report issues
#249
LMBradford
closed
3 weeks ago
1
Collect dummy files in a directory
#248
LMBradford
opened
1 month ago
0
tgx-ddi summary csv
#247
LMBradford
closed
3 weeks ago
0
Move qc'ed metadata output
#246
LMBradford
closed
1 month ago
0
QC_per_sample.txt and NMR plots in QC report show reads in thousands
#245
LMBradford
opened
1 month ago
1
Config update
#244
LMBradford
closed
1 month ago
1
Biomarker reports only run on facets with DEGs, but could run on all
#243
LMBradford
closed
3 weeks ago
1
Add TGx-DDI reporting module
#242
LMBradford
closed
1 month ago
0
hotfix to rename variable properly
#241
mattjmeier
closed
2 months ago
0
fix contrast sorting for edge cases where sortcol has only one value
#240
mattjmeier
closed
2 months ago
0
Make test that contrasts are tab delimited
#239
LMBradford
closed
1 month ago
2
Only make reports for facets with DEGs
#238
LMBradford
closed
1 month ago
0
Allow biospyder_dbs and biospyder_manifest_file to be null in config schema
#237
LMBradford
closed
1 month ago
1
Qc group dendro cutoffs
#236
LMBradford
closed
2 months ago
1
Fix the sizing of the darn QC plate position figure
#235
LMBradford
closed
3 weeks ago
2
go_pathway_report param in config is unnecessary?
#234
LMBradford
opened
2 months ago
0
Config params for metadata and contrast file names
#233
LMBradford
closed
1 month ago
1
Update default config
#232
LMBradford
closed
2 months ago
0
Add biomarker modules
#231
LMBradford
opened
2 months ago
0
R.ODAF.utils pkg in repo
#230
LMBradford
closed
2 months ago
1
use azure envvar that is in all tasks
#229
LMBradford
closed
3 months ago
0
Begin refactoring workflow
#228
mattjmeier
closed
2 months ago
0
don't load STAR genome to memory on Azure
#227
LMBradford
closed
3 months ago
0
add test for align_dir in rule STAR
#226
LMBradford
closed
3 months ago
0
Branch to test R package
#225
mattjmeier
closed
3 months ago
0
remove nonfunctional troubleshooting code
#224
LMBradford
closed
3 months ago
0
print conda env packages during build try3
#223
LMBradford
closed
3 months ago
0
print conda env packages during build try2
#222
LMBradford
closed
3 months ago
0
print conda env packages during build
#221
LMBradford
closed
3 months ago
0
add conda package listing try2
#220
LMBradford
closed
3 months ago
0
Change conda list code in Dockerfile
#219
LMBradford
closed
3 months ago
0
add conda package listing to Dockerfile for build workflow
#218
LMBradford
closed
3 months ago
0
Print conda env contents during tests
#217
LMBradford
closed
3 months ago
0
Dendograms don't print in Sample QC report
#216
LMBradford
closed
2 months ago
1
Fix explorer plots
#215
LMBradford
closed
4 months ago
2
Update schema
#214
LMBradford
closed
3 months ago
0
Pull main into fix_platefig_facets so docker builds work
#213
LMBradford
closed
3 weeks ago
0
Merge main into peripancreatic branch
#212
LMBradford
closed
4 months ago
0
- Start of ToxicRmod commit
#211
syeddans
opened
4 months ago
1
- multiqc 1.18 to return fastp reports
#210
syeddans
closed
5 months ago
0
Automate install.R Suggestion
#209
syeddans
opened
5 months ago
0
Add config params
#208
LMBradford
closed
5 months ago
0
- fix missing fastp report
#207
syeddans
closed
5 months ago
2
hardcode linear FC to 1.2 for biosets filtering
#206
LMBradford
closed
5 months ago
1
Add checks (intgroup_to_plot list, existence of ref files)
#205
LMBradford
closed
5 months ago
0
Biosets should be filtered by lfc>1.2, not 1.5
#204
LMBradford
closed
5 months ago
0
Fix tagging
#203
mattjmeier
closed
5 months ago
0
Build container
#202
mattjmeier
closed
5 months ago
0
Remove unnecessary lines
#201
mattjmeier
closed
5 months ago
0
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