Open kaitlinchaung opened 10 months ago
Hi, I am currently trying to use the gs-to-wsp function, but I am getting errors related to boolean gating. I can't find a relevant Issue or documentation pertaining this error, so I am unsure how to proceed.
gs-to-wsp
My gating template does contain boolean gates.
Command:
sudo docker run \ -v <path>/gs:/gs \ -v <path>/out:/out \ public.ecr.aws/x4k5d9i7/cytoverse/gs-to-wsp \ --src=gs/ \ --dest=/out/test_bbt.wsp
Error:
terminate called after throwing an instance of 'std::runtime_error' what(): isNot flag must be TRUE in 'Not' boolean gate!
The beginning of the gating template, where the CD3Neg gate is causing the failure:
alias,pop,parent,dims,gating_method,gating_args,collapseDataForGating,groupBy,preprocessing_method,preprocessing_args CD14gate,+,root,CD14,gate_mindensity2,"gate_range=c(1,3)",,,, CD56gate,+,root,CD56,gate_mindensity2,"gate_range=c(1,3)",,,, CD3gate,+,root,CD3,gate_mindensity2,"gate_range=c(1,3)",,,, CD19gate,+,root,CD19,gate_mindensity2,"gate_range=c(1,3)",,,, CD3Neg,+,root,CD3,boolGate,!CD3gate,,,, CD3Pos,+,root,CD3,boolGate,CD3gate,,,,
Thank you!
Hi, I am currently trying to use the
gs-to-wsp
function, but I am getting errors related to boolean gating. I can't find a relevant Issue or documentation pertaining this error, so I am unsure how to proceed.My gating template does contain boolean gates.
Command:
Error:
The beginning of the gating template, where the CD3Neg gate is causing the failure:
Thank you!