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RLC-DCPPC / NeMO-Analytics

Agile tracking for the NeMO Analytics project
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Map story about Pou3f2 to needed datasets #2

Open RLC-DCPPC opened 5 years ago

RLC-DCPPC commented 5 years ago

Top-level issue to contain sub-tasks:

seth-ament commented 5 years ago

  1. in vivo cortex development bulk RNA-seq 1a. BrainSpan DLPFC bulk RNA-seq 1b. LIBD BrainSeq DLPFC data 1c. non-human primate laser microdissection (gene expression microarrays)

  2. in vivo cortex development single-cell RNA-seq 2a. Kriegstein "6k" human cortex development single-cell RNA-seq (SMART-seq) 2b. Darmanis/Quake human cortex development single-cell RNA-seq (SMART-seq) 2c. Kriegstein 10x human DLPFC development single-cell RNA-seq (10x)

  3. stem cell models of human cortex development (bulk RNA-seq/microarrays) 3a. CORTECON 3b. POU3F2 over-expression in neural progenitors (Pearl et al. in press)

  4. stem cell models of human cortex development single-cell RNA-seq [several datasets in this space -- maybe choose 1-2] 4a. Vaccarino PsychENCODE 2018 organoids 4b. ...

  5. in vivo epigenomics data 5a. human DLPFC ATAC-seq CP vs. VZ (Geschwind Cell 2018; ATAC-seq) 5b. ROADMAP fetal brain chromatin states

RLC-DCPPC commented 5 years ago

Bob to create issues. In priority order.

RLC-DCPPC commented 5 years ago

Seth to think about SVG-type visualizations where appropriate.

RLC-DCPPC commented 5 years ago

Created sub-tasks as linked through the to-do list in the description.

RLC-DCPPC commented 5 years ago

Kamino cloned this issue to nemoarchive/analytics