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RacimoLab
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simGL
Simulate genotype likelihoods from tree sequence data
ISC License
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generalization of functions to include different error rate per…
#27
MoiColl
opened
2 years ago
0
Simulate linked depth by simulating reads
#26
MoiColl
opened
2 years ago
1
change depth sampling function to make sure all depths > 0
#25
MoiColl
closed
2 years ago
0
Completting and creating test functions to improve coverage
#24
MoiColl
closed
2 years ago
2
fix tests and remove build files
#23
grahamgower
closed
2 years ago
1
Read depth at distinct sites is non-independent
#22
grahamgower
opened
2 years ago
11
Draw error rate from a distribution
#21
grahamgower
opened
2 years ago
9
Consider support for a reference bias when simulating read counts
#20
grahamgower
opened
2 years ago
0
Add sequencing errors in non-polymorphic sites
#19
MoiColl
closed
2 years ago
1
generalization and vectorization of GL computation
#18
MoiColl
closed
2 years ago
6
formalise the model for simulating read counts
#17
grahamgower
opened
2 years ago
0
Add license
#16
MoiColl
closed
2 years ago
0
simGL does not seem to be a good name...
#15
MoiColl
closed
2 years ago
2
test
#14
grahamgower
closed
2 years ago
0
Integrate tests that compare genotype likelihoods with ANGSD/samtools/bcftools/gatk.
#13
grahamgower
opened
2 years ago
0
code assumes diploids
#12
grahamgower
closed
2 years ago
1
split sim_allelereadcounts() into two functions
#11
grahamgower
closed
2 years ago
3
Don't call sys.exit(), raise an exception instead.
#10
grahamgower
closed
2 years ago
1
test workflow fixes
#9
grahamgower
closed
2 years ago
2
Cleanup and reorganise
#8
grahamgower
closed
2 years ago
1
move notebook bits into their own folder
#7
grahamgower
closed
2 years ago
1
apply style and formatting checks
#6
grahamgower
opened
2 years ago
0
add github actions workflow file that runs tests
#5
grahamgower
closed
2 years ago
0
add tests that are runnable with pytest
#4
grahamgower
closed
2 years ago
1
add setup.cfg, pyproject.toml, etc
#3
grahamgower
opened
2 years ago
0
Reorganise directory structure to simplify creation of a python package
#2
grahamgower
closed
2 years ago
0
add .gitignore and remove files that shouldn't be tracked
#1
grahamgower
closed
2 years ago
0