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RaphaelS1 / survivalmodels

Implementations of survival models in R
https://raphaels1.github.io/survivalmodels/
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PyCox Installation Error #31

Closed DarioS closed 2 years ago

DarioS commented 2 years ago

I'm not sure why it's trying to modify a system directory which I have no edit acess to on a shared server.

> install_pycox()
Error in virtualenv_install(envname = envname, packages = packages, ignore_installed = pip_ignore_installed,  : 
  '/usr/bin' exists but is not a virtual environment

The versions of software are:

> sessionInfo()
R version 4.1.1 (2021-08-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 11 (bullseye)

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.13.so
RaphaelS1 commented 2 years ago

See reticulate::py_install, feel free to open an issue there