RobertoLorusso / BraTS

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Image preprocessing: Quantile normalization #8

Closed RobertoLorusso closed 10 months ago

RobertoLorusso commented 11 months ago

In the current version quantile normalisation is applied on the following axes: (0,1,2,3). Results within the first epochs aren't as good as I expected. Probably is due to the a wrong choice of the axes.

I load the images channel first, resulting in the following shape for each image: (4,240,240,240) Should try to train the model after normalisation on the following configurations:

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RobertoLorusso commented 11 months ago

The quantiles must be obtained excluding the channel from the 'axis' parameter. I should try first with axis = (1,2,3) and see if there are any improvements.