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Rostlab / ConSurf

Evolutionary conservation estimation of residues or nucleotides
http://consurf.tau.ac.il/overview.html
GNU General Public License v3.0
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Blastpgp. Obsolete Software #6

Closed GrimSmiler closed 8 years ago

GrimSmiler commented 8 years ago

Blastpgp is no longer available.

It is encouraged to use blast+ (sudo apt-get install ncbi-blast+)

GrimSmiler commented 8 years ago

Executable for linux can be downloaded here

GrimSmiler commented 8 years ago

http://mirrors.vbi.vt.edu/mirrors/ftp.ncbi.nih.gov/blast/executables/release/2.2.26/

GrimSmiler commented 8 years ago

Managed to run consurf returns an error:

ConSurf Version 1.0.6
====================================
Process Started at 20:55:11

Output files could be found in output directory: /vagrant/ConSurf-develop/output_test//
[blastpgp] ERROR: No argument value given for Database

run_blast : run of blast fail. /tmp/WZNObQWiVi//1lk2_A.protein_query.blast is zero or not exists
juanmirocks commented 8 years ago

This issue appears to be a duplicate of https://github.com/Rostlab/ConSurf/issues/8

GrimSmiler commented 8 years ago

issue found. fix will be presented in #8

juanmirocks commented 8 years ago

Great job