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Rostlab / MetaStudent

Sequence-based Protein GO / Functional Predictor
GNU General Public License v2.0
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Create gradle files to create jars #11

Closed juanmirocks closed 8 years ago

juanmirocks commented 8 years ago

Dependencies

blast2 ca-certificates-java default-jre default-jre-headless fontconfig fontconfig-config fonts-liberation graphviz hicolor-icon-theme icedtea-6-jre-cacao icedtea-6-jre-jamvm icedtea-netx
  icedtea-netx-common java-common libasound2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcdt4
  libcgraph5 libcups2 libdata-stag-perl libdatrie1 libencode-locale-perl libffi5 libfile-chdir-perl libfile-listing-perl libflac8 libfont-afm-perl libfontconfig1 libfreezethaw-perl libgd-gd2-perl
  libgd2-xpm libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif4 libglib2.0-0 libglib2.0-data libgo-perl libgraph-perl libgraph4 libgraphviz-perl libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgvc5
  libgvpr1 libheap-perl libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libice6 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libjasper1 libjbig0 libjpeg8 libjson0 liblcms2-2 libltdl7
  liblwp-mediatypes-perl liblwp-protocol-https-perl libmailtools-perl libmldbm-perl libncbi6 libnet-http-perl libnet-ssleay-perl libnspr4 libnss3 libogg0 libpango1.0-0 libparse-recdescent-perl
  libpathplan4 libpcsclite1 libpixman-1-0 libpng12-0 libpulse0 libsm6 libsndfile1 libsocket-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 liburi-perl libvorbis0a libvorbisenc2 libwww-perl
  libwww-robotrules-perl libx11-xcb1 libxaw7 libxcb-render0 libxcb-shm0 libxcomposite1 libxcursor1 libxdamage1 libxdot4 libxfixes3 libxft2 libxi6 libxinerama1 libxml-checker-perl libxml-dom-perl
  libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-twig-perl
  libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxmu6 libxpm4 libxrandr2 libxrender1 libxslt1.1 libxt6 libxtst6 ncbi-data openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib perl-tk
  shared-mime-info ttf-dejavu-core ttf-dejavu-extra ttf-liberation tzdata-java x11-common xsltproc
Suggested packages:
  libvibrant6a ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 gsfonts graphviz-doc equivs libasound2-plugins cups-common libgd-tools bioperl librsvg2-common gvfs libdata-dump-perl libjasper-runtime
  liblcms2-utils libcrypt-ssleay-perl ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp pcscd pulseaudio libauthen-ntlm-perl libunicode-map8-perl
  libunicode-string-perl xml-twig-tools icedtea-plugin libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei ttf-wqy-zenhei ttf-indic-fonts
The following NEW packages will be installed:
  blast2 ca-certificates-java default-jre default-jre-headless fontconfig fontconfig-config fonts-liberation graphviz hicolor-icon-theme icedtea-6-jre-cacao icedtea-6-jre-jamvm icedtea-netx
  icedtea-netx-common java-common libasound2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcdt4
  libcgraph5 libcups2 libdata-stag-perl libdatrie1 libencode-locale-perl libffi5 libfile-chdir-perl libfile-listing-perl libflac8 libfont-afm-perl libfontconfig1 libfreezethaw-perl libgd-gd2-perl
  libgd2-xpm libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif4 libglib2.0-0 libglib2.0-data libgo-perl libgraph-perl libgraph4 libgraphviz-perl libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgvc5
  libgvpr1 libheap-perl libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libice6 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libjasper1 libjbig0 libjpeg8 libjson0 liblcms2-2 libltdl7
  liblwp-mediatypes-perl liblwp-protocol-https-perl libmailtools-perl libmldbm-perl libncbi6 libnet-http-perl libnet-ssleay-perl libnspr4 libnss3 libogg0 libpango1.0-0 libparse-recdescent-perl
  libpathplan4 libpcsclite1 libpixman-1-0 libpng12-0 libpulse0 libsm6 libsndfile1 libsocket-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 liburi-perl libvorbis0a libvorbisenc2 libwww-perl
  libwww-robotrules-perl libx11-xcb1 libxaw7 libxcb-render0 libxcb-shm0 libxcomposite1 libxcursor1 libxdamage1 libxdot4 libxfixes3 libxft2 libxi6 libxinerama1 libxml-checker-perl libxml-dom-perl
  libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-twig-perl
  libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxmu6 libxpm4 libxrandr2 libxrender1 libxslt1.1 libxt6 libxtst6 metastudent ncbi-data openjdk-6-jre openjdk-6-jre-headless
  openjdk-6-jre-lib perl-tk shared-mime-info ttf-dejavu-core ttf-dejavu-extra ttf-liberation tzdata-java x11-common xsltproc
anshkapil commented 8 years ago

Jars created manually

juanmirocks commented 8 years ago

Still, better to create the build gradle/maven files. Besides, where are the jars?

:+1: Good email to Tobias. Thanks for that

anshkapil commented 8 years ago

The jars I have locally right now, will commit the when the bugs are fixed

anshkapil commented 8 years ago

jars commited to Develop branch, present in metastudentpkg folder

juanmirocks commented 8 years ago

Well, the jars should not be really committed. Rather put in the downloads list. But good enough for now.

The build files are more important.

juanmirocks commented 8 years ago

FYI (I make now develop the default branch)

juanmirocks commented 8 years ago

@anshkapil if you already started with this, please commit the build files. If you decided not to, fine.

Close issue anyway.