Roth-Lab pyclone issues

Roth-Lab / pyclone

Probabilistic model for inferring clonal population structure from deep NGS sequencing.

https://bitbucket.org/aroth85/pyclone/wiki/Home

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issues

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Pyclone Input

#28 sunyu1010 opened 10 months ago
0
Reproducibility issue

#27 jamelee opened 1 year ago
1
Reproducility issue

#26 jamelee opened 1 year ago
0
Preparing input files for pyclone from Varscan output snp files

#25 maheshworpaudel5001 opened 1 year ago
0
Should at least one mutation id overlap between any two of the input samples?

#24 lincj1994 opened 2 years ago
0
is tcltk necessary? can I run in non-interactive mode?

#23 xmzhuo closed 3 years ago
2
ref_count and var_count input for Pyclone

#22 TnakaNY opened 3 years ago
3
major/minor copy number must be integer?

#21 TnakaNY closed 3 years ago
2
minor_cn equal to the major_cn

#20 pawelqs opened 3 years ago
0
how to use private somation mutation in pyclone?

#19 YunjieSong opened 4 years ago
1
pyclone wiki is not available

#18 ryansohny closed 4 years ago
1
PyClone is now available through bioconda

#17 asntech closed 4 years ago
1
ImportError: No module named cli

#16 dawe opened 4 years ago
1
Specify loaders for `yaml.load`

#15 erobitschek closed 4 years ago
0
How to classify subclone from PyClone result

#14 bioxu opened 4 years ago
0
Modify x label rotations in parallel_coordinates?

#13 wangshun1121 opened 4 years ago
0
recommended inputs for whole exome sequencing data

#12 JakeConway opened 5 years ago
0
Strange values for cellular prevalence and variant allele frequency>?

#11 jmchan88 opened 5 years ago
1
--init_method connected not present

#10 rschenck closed 5 years ago
2
Mutations in common not found across yamls

#9 schianta opened 5 years ago
3
Can Python3 use Pyclone?

#8 yanglq-bio opened 5 years ago
1
Fail to reproduce tutorial sample results in 2014 paper

#7 gengyuncong opened 5 years ago
1
No pdfs under result/plots/loci

#6 Tina9 opened 5 years ago
0
cannot cache function 'log_beta'

#5 jatintalwar opened 5 years ago
5
run testfile meet error

#4 WRui opened 5 years ago
0
RuntimeError: Invalid DISPLAY variable

#3 biolxy closed 6 years ago
2
Incorrect if statement

#2 janka2012 opened 6 years ago
0
ValueError: gammavariate: alpha and beta must be > 0.0

#1 1988liszt opened 7 years ago
4