Describe the bug
Diff commands silently quit if multiBigwigSummary encounters errors, and it is unclear that the command failed.
To Reproduce
Run a diff with an incorrect (e.g. extra, fake chromosome) custom regions file. The program will print
Generating the KAS-seq matrix on edited_merged.sorted.broad.bed...
to console, and then finish.
Expected behavior
Users should be informed of encountered errors
Describe the bug Diff commands silently quit if multiBigwigSummary encounters errors, and it is unclear that the command failed.
To Reproduce Run a diff with an incorrect (e.g. extra, fake chromosome) custom regions file. The program will print
Generating the KAS-seq matrix on edited_merged.sorted.broad.bed...
to console, and then finish.Expected behavior Users should be informed of encountered errors