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SACGF / variantgrid

VariantGrid public repo
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Zygosity count - calculate and choose different options #365

Open davmlaw opened 3 years ago

davmlaw commented 3 years ago

At the moment we have "Global variant zygosity count" which is non-germline samples

We can support multiple ones, we just only have 1 at the moment

Need to work out what people would like to split by, could be eg

Things that use the counts, ie "All variants node" and the analysis columns (db het count) need to choose what they join to

davmlaw commented 1 year ago

Might be nice to do per kit as well? So we know it has ever been seen in a kit?

Also per-patient, though it would be difficult to do this in a way that doesn't get super slow as you add more samples over time

davmlaw commented 11 months ago

Feature request for:

a node that filters on germline variants only or somatic variants only (each sample would have to be tagged beforehand as germline/somatic), and a node that filters on present in tumour + absent in germline (each tumour/germline pair would have to be tagged beforehand)