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The BiGG Models website server
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Universal metabolite search failure #423

Open ahoiching opened 1 month ago

ahoiching commented 1 month ago

Description of the issue

I tried to fetch: 'http://bigg.ucsd.edu/api/v2/universal/metabolites/g3p'

Instead of getting the information of g3p, I got:

{"database_links": {"InChI Key": [{"link": "https://identifiers.org/inchikey/LXJXRIRHZLFYRP-VKHMYHEASA-L", "id": "LXJXRIRHZLFYRP-VKHMYHEASA-L"}], "Reactome Compound": [{"link": "http://identifiers.org/reactome/R-ALL-29578", "id": "29578"}], "SEED Compound": [{"link": "http://identifiers.org/seed.compound/cpd00102", "id": "cpd00102"}, {"link": "http://identifiers.org/seed.compound/cpd19005", "id": "cpd19005"}], "CHEBI": [{"link": "http://identifiers.org/chebi/CHEBI:12983", "id": "CHEBI:12983"}, {"link": "http://identifiers.org/chebi/CHEBI:12984", "id": "CHEBI:12984"}, {"link": "http://identifiers.org/chebi/CHEBI:14333", "id": "CHEBI:14333"}, {"link": "http://identifiers.org/chebi/CHEBI:17138", "id": "CHEBI:17138"}, {"link": "http://identifiers.org/chebi/CHEBI:181", "id": "CHEBI:181"}, {"link": "http://identifiers.org/chebi/CHEBI:18324", "id": "CHEBI:18324"}, {"link": "http://identifiers.org/chebi/CHEBI:21026", "id": "CHEBI:21026"}, {"link": "http://identifiers.org/chebi/CHEBI:29052", "id": "CHEBI:29052"}, {"link": "http://identifiers.org/chebi/CHEBI:5446", "id": "CHEBI:5446"}, {"link": "http://identifiers.org/chebi/CHEBI:58027", "id": "CHEBI:58027"}, {"link": "http://identifiers.org/chebi/CHEBI:59776", "id": "CHEBI:59776"}], "Human Metabolome Database": [{"link": "http://identifiers.org/hmdb/HMDB01112", "id": "HMDB01112"}], "MetaNetX (MNX) Chemical": [{"link": "http://identifiers.org/metanetx.chemical/MNXM74", "id": "MNXM74"}], "KEGG Compound": [{"link": "http://identifiers.org/kegg.compound/C00118", "id": "C00118"}, {"link": "http://identifiers.org/kegg.compound/C00661", "id": "C00661"}], "BioCyc": [{"link": "http://identifiers.org/biocyc/META:GAP", "id": "META:GAP"}]}, "bigg_id": "g3p", "formulae": ["C3H9O6P", "C3H5O6P"], "old_identifiers": ["g3p"], "charges": [0, -2], "name": "Glyceraldehyde 3-phosphate", "compartments_in_models": [{"bigg_id": "c", "organism": "Escherichia coli str. K-12 substr. MG1655", "model_bigg_id": "iJO1366"}, {"bigg_id": "c", "organism": "Escherichia coli str. K-12 substr. MG1655", "model_bigg_id": "iAF1260"}, {"bigg_id": "c", "organism": "Saccharomyces cerevisiae S288C", "model_bigg_id": "iMM904"}, {"bigg_id": "c", "organism": "Staphylococcus aureus subsp. aureus N315", "model_bigg_id": "iSB619"}, {"bigg_id": "c", "organism": "Escherichia coli APEC O1", "model_bigg_id": "iAPECO1_1312"}, {"bigg_id": "c", "organism": "Saccharomyces cerevisiae S288C", "model_bigg_id": "iND750"}, {"bigg_id": "c", "organism": "Yersinia pestis CO92", "model_bigg_id": "iPC815"}, {"bigg_id": "c", "organism": "Shigella flexneri 2a str. 301", "model_bigg_id": "iSF_1195"}, {"bigg_id": "c", "organism": "Pseudomonas putida KT2440", "model_bigg_id": "iJN746"}, {"bigg_id": "c", "organism": "Helicobacter pylori 26695", "model_bigg_id": "iIT341"}, {"bigg_id": "c", "organism": "Mycobacterium tuberculosis H37Rv", "model_bigg_id": "iNJ661"}, {"bigg_id": "c", "organism": "Escherichia coli BW2952", "model_bigg_id": "iBWG_1329"}, {"bigg_id": "c", "organism": "Escherichia coli BL21(DE3)", "model_bigg_id": "iB21_1397"}, {"bigg_id": "c", "organism": "Escherichia coli CFT073", "model_bigg_id": "ic_1306"}, {"bigg_id": "c", "organism": "Escherichia coli O127:H6 str. E2348/69", "model_bigg_id": "iE2348C_1286"}, {"bigg_id": "c", "organism": "Escherichia coli 042", "model_bigg_id": "iEC042_1314"}, {"bigg_id": "c", "organism": "Escherichia coli 55989", "model_bigg_id": "iEC55989_1330"}, {"bigg_id": "c", "organism": "Escherichia coli ABU 83972", "model_bigg_id": "iECABU_c1320"}, {"bigg_id": "c", "organism": "Escherichia coli B str. REL606", "model_bigg_id": "iECB_1328"}, {"bigg_id": "c", "organism": "Escherichia coli 'BL21-Gold(DE3)pLysS AG'", "model_bigg_id": "iECBD_1354"}, {"bigg_id": "c", "organism": "Escherichia coli BL21(DE3)", "model_bigg_id": "iECD_1391"}, {"bigg_id": "c", "organism": "Escherichia coli DH1", "model_bigg_id": "iEcDH1_1363"}, {"bigg_id": "c", "organism": "Escherichia coli DH1", "model_bigg_id": "iECDH1ME8569_1439"}, {"bigg_id": "c", "organism": "Escherichia coli str. K-12 substr. DH10B", "model_bigg_id": "iECDH10B_1368"}, {"bigg_id": "c", "organism": "Escherichia coli O139:H28 str. E24377A", "model_bigg_id": "iEcE24377_1341"}, {"bigg_id": "c", "organism": "Escherichia coli ED1a", "model_bigg_id": "iECED1_1282"}, {"bigg_id": "c", "organism": "Escherichia coli O157:H7 str. EC4115", "model_bigg_id": "iECH74115_1262"}, {"bigg_id": "c", "organism": "Escherichia coli HS", "model_bigg_id": "iEcHS_1320"}, {"bigg_id": "c", "organism": "Escherichia coli IAI1", "model_bigg_id": "iECIAI1_1343"}, {"bigg_id": "c", "organism": "Escherichia coli IAI39", "model_bigg_id": "iECIAI39_1322"}, {"bigg_id": "c", "organism": "Escherichia coli NA114", "model_bigg_id": "iECNA114_1301"}, {"bigg_id": "c", "organism": "Escherichia coli O103:H2 str. 12009", "model_bigg_id": "iECO103_1326"}, {"bigg_id": "c", "organism": "Escherichia coli O111:H- str. 11128", "model_bigg_id": "iECO111_1330"}, {"bigg_id": "c", "organism": "Escherichia coli O26:H11 str. 11368", "model_bigg_id": "iECO26_1355"}, {"bigg_id": "c", "organism": "Escherichia coli IHE3034", "model_bigg_id": "iECOK1_1307"}, {"bigg_id": "c", "organism": "Escherichia coli ATCC 8739", "model_bigg_id": "iEcolC_1368"}, {"bigg_id": "c", "organism": "Escherichia coli 536", "model_bigg_id": "iECP_1309"}, {"bigg_id": "c", "organism": "Escherichia coli S88", "model_bigg_id": "iECS88_1305"}, {"bigg_id": "c", "organism": "Escherichia coli O157:H7 str. Sakai", "model_bigg_id": "iECs_1301"}, {"bigg_id": "c", "organism": "Escherichia coli SE11", "model_bigg_id": "iECSE_1348"}, {"bigg_id": "c", "organism": "Escherichia coli SE15", "model_bigg_id": "iECSF_1327"}, {"bigg_id": "c", "organism": "Escherichia coli SMS-3-5", "model_bigg_id": "iEcSMS35_1347"}, {"bigg_id": "c", "organism": "Escherichia coli O157:H7 str. TW14359", "model_bigg_id": "iECSP_1301"}, {"bigg_id": "c", "organism": "Escherichia coli UMN026", "model_bigg_id": "iECUMN_1333"}, {"bigg_id": "c", "organism": "Escherichia coli W", "model_bigg_id": "iECW_1372"}, {"bigg_id": "c", "organism": "Escherichia coli KO11FL", "model_bigg_id": "iEKO11_1354"}, {"bigg_id": "c", "organism": "Escherichia coli ETEC H10407", "model_bigg_id": "iETEC_1333"}, {"bigg_id": "c", "organism": "Escherichia coli O55:H7 str. CB9615", "model_bigg_id": "iG2583_1286"}, {"bigg_id": "c", "organism": "Escherichia coli LF82", "model_bigg_id": "iLF82_1304"}, {"bigg_id": "c", "organism": "Escherichia coli O83:H1 str. NRG 857C", "model_bigg_id": "iNRG857_1313"}, {"bigg_id": "c", "organism": "Shigella flexneri 2a str. 2457T", "model_bigg_id": "iS_1188"}, {"bigg_id": "c", "organism": "Shigella boydii CDC 3083-94", "model_bigg_id": "iSbBS512_1146"}, {"bigg_id": "c", "organism": "Shigella boydii Sb227", "model_bigg_id": "iSBO_1134"}, {"bigg_id": "c", "organism": "Shigella dysenteriae Sd197", "model_bigg_id": "iSDY_1059"}, {"bigg_id": "c", "organism": "Shigella flexneri 5 str. 8401", "model_bigg_id": "iSFV_1184"}, {"bigg_id": "c", "organism": "Shigella flexneri 2002017", "model_bigg_id": "iSFxv_1172"}, {"bigg_id": "c", "organism": "Shigella sonnei Ss046", "model_bigg_id": "iSSON_1240"}, {"bigg_id": "c", "organism": "Escherichia coli UM146", "model_bigg_id": "iUMN146_1321"}, {"bigg_id": "c", "organism": "Escherichia coli UMNK88", "model_bigg_id": "iUMNK88_1353"}, {"bigg_id": "c", "organism": "Escherichia coli UTI89", "model_bigg_id": "iUTI89_1310"}, {"bigg_id": "c", "organism": "Escherichia coli W", "model_bigg_id": "iWFL_1372"}, {"bigg_id": "c", "organism": "Escherichia coli O157:H7 str. EDL933", "model_bigg_id": "iZ_1308"}, {"bigg_id": "c", "organism": "Escherichia coli str. K-12 substr. MG1655", "model_bigg_id": "iJR904"}, {"bigg_id": "c", "organism": "Escherichia coli str. K-12 substr. MG1655", "model_bigg_id": "e_coli_core"}, {"bigg_id": "c", "organism": "Klebsiella pneumoniae subsp. pneumoniae MGH 78578", "model_bigg_id": "iYL1228"}, {"bigg_id": "c", "organism": "Salmonella enterica subsp. enterica serovar Typhimurium str. LT2", "model_bigg_id": "STM_v1_0"}, {"bigg_id": "c", "organism": "Geobacter metallireducens GS-15", "model_bigg_id": "iAF987"}, {"bigg_id": "c", "organism": "Synechocystis sp. PCC 6803", "model_bigg_id": "iJN678"}, {"bigg_id": "c", "organism": "Mus musculus", "model_bigg_id": "iMM1415"}, {"bigg_id": "c", "organism": "Methanosarcina barkeri str. Fusaro", "model_bigg_id": "iAF692"}, {"bigg_id": "c", "organism": "Thermotoga maritima MSB8", "model_bigg_id": "iLJ478"}, {"bigg_id": "c", "organism": "Clostridium ljungdahlii DSM 13528", "model_bigg_id": "iHN637"}, {"bigg_id": "c", "organism": "Chlamydomonas reinhardtii", "model_bigg_id": "iRC1080"}, {"bigg_id": "c", "organism": "Escherichia coli str. K-12 substr. W3110", "model_bigg_id": "iY75_1357"}, {"bigg_id": "c", "organism": "Bacillus subtilis subsp. subtilis str. 168", "model_bigg_id": "iYO844"}, {"bigg_id": "c", "organism": "Homo sapiens", "model_bigg_id": "RECON1"}, {"bigg_id": "c", "organism": "Homo sapiens", "model_bigg_id": "iAT_PLT_636"}, {"bigg_id": "c", "organism": "Homo sapiens", "model_bigg_id": "iAB_RBC_283"}, {"bigg_id": "c", "organism": "Escherichia coli str. K-12 substr. MG1655", "model_bigg_id": "iAF1260b"}, {"bigg_id": "c", "organism": "Cricetulus griseus", "model_bigg_id": "iCHOv1"}, {"bigg_id": "c", "organism": "Lactococcus lactis subsp. cremoris MG1363", "model_bigg_id": "iNF517"}, {"bigg_id": "c", "organism": "Escherichia coli str. K-12 substr. MG1655", "model_bigg_id": "iML1515"}, {"bigg_id": "c", "organism": "Synechococcus elongatus PCC 7942", "model_bigg_id": "iJB785"}, {"bigg_id": "c", "organism": "Phaeodactylum tricornutum CCAP 1055/1", "model_bigg_id": "iLB1027_lipid"}, {"bigg_id": "c", "organism": "Homo sapiens", "model_bigg_id": "Recon3D"}, {"bigg_id": "c", "organism": "Mycobacterium tuberculosis H37Rv", "model_bigg_id": "iEK1008"}, {"bigg_id": "c", "organism": "Cricetulus griseus", "model_bigg_id": "iCHOv1_DG44"}, {"bigg_id": "c", "organism": "Staphylococcus aureus subsp. aureus USA300_TCH1516", "model_bigg_id": "iYS854"}, {"bigg_id": "c", "organism": "Escherichia coli BL21(DE3)", "model_bigg_id": "iEC1356_Bl21DE3"}, {"bigg_id": "c", "organism": "Escherichia coli ATCC 8739", "model_bigg_id": "iEC1349_Crooks"}, {"bigg_id": "c", "organism": "Escherichia coli W", "model_bigg_id": "iEC1364_W"}, {"bigg_id": "c", "organism": "Escherichia coli str. K-12 substr. W3110", "model_bigg_id": "iEC1372_W3110"}, {"bigg_id": "c", "organism": "Acinetobacter baumannii AYE", "model_bigg_id": "iCN718"}, {"bigg_id": "c", "organism": "Escherichia coli DH5[alpha]", "model_bigg_id": "iEC1368_DH5a"}, {"bigg_id": "c", "organism": "Escherichia coli C", "model_bigg_id": "iEC1344_C"}, {"bigg_id": "c", "organism": "Synechocystis sp. PCC 6803", "model_bigg_id": "iSynCJ816"}, {"bigg_id": "c", "organism": "Plasmodium falciparum 3D7", "model_bigg_id": "iAM_Pf480"}, {"bigg_id": "c", "organism": "Plasmodium vivax Sal-1", "model_bigg_id": "iAM_Pv461"}, {"bigg_id": "c", "organism": "Plasmodium berghei", "model_bigg_id": "iAM_Pb448"}, {"bigg_id": "c", "organism": "Plasmodium cynomolgi strain B", "model_bigg_id": "iAM_Pc455"}, {"bigg_id": "c", "organism": "Plasmodium knowlesi strain H", "model_bigg_id": "iAM_Pk459"}, {"bigg_id": "c", "organism": "Trypanosoma cruzi Dm28c", "model_bigg_id": "iIS312_Trypomastigote"}, {"bigg_id": "c", "organism": "Trypanosoma cruzi Dm28c", "model_bigg_id": "iIS312_Epimastigote"}, {"bigg_id": "c", "organism": "Trypanosoma cruzi Dm28c", "model_bigg_id": "iIS312"}, {"bigg_id": "c", "organism": "Trypanosoma cruzi Dm28c", "model_bigg_id": "iIS312_Amastigote"}, {"bigg_id": "c", "organism": "Clostridioides difficile 630", "model_bigg_id": "iCN900"}, {"bigg_id": "c", "organism": "Pseudomonas putida KT2440", "model_bigg_id": "iJN1463"}, {"bigg_id": "c", "organism": "Salmonella pan-reactome", "model_bigg_id": "iYS1720"}, {"bigg_id": "e", "organism": "Clostridioides difficile 630", "model_bigg_id": "iCN900"}, {"bigg_id": "m", "organism": "Chlamydomonas reinhardtii", "model_bigg_id": "iRC1080"}, {"bigg_id": "m", "organism": "Phaeodactylum tricornutum CCAP 1055/1", "model_bigg_id": "iLB1027_lipid"}, {"bigg_id": "x", "organism": "Trypanosoma cruzi Dm28c", "model_bigg_id": "iIS312_Trypomastigote"}, {"bigg_id": "x", "organism": "Trypanosoma cruzi Dm28c", "model_bigg_id": "iIS312_Epimastigote"}, {"bigg_id": "x", "organism": "Trypanosoma cruzi Dm28c", "model_bigg_id": "iIS312"}, {"bigg_id": "x", "organism": "Trypanosoma cruzi Dm28c", "model_bigg_id": "iIS312_Amastigote"}, {"bigg_id": "h", "organism": "Chlamydomonas reinhardtii", "model_bigg_id": "iRC1080"}, {"bigg_id": "h", "organism": "Phaeodactylum tricornutum CCAP 1055/1", "model_bigg_id": "iLB1027_lipid"}, {"bigg_id": "h", "organism": "Plasmodium falciparum 3D7", "model_bigg_id": "iAM_Pf480"}, {"bigg_id": "h", "organism": "Plasmodium vivax Sal-1", "model_bigg_id": "iAM_Pv461"}, {"bigg_id": "h", "organism": "Plasmodium berghei", "model_bigg_id": "iAM_Pb448"}, {"bigg_id": "h", "organism": "Plasmodium cynomolgi strain B", "model_bigg_id": "iAM_Pc455"}, {"bigg_id": "h", "organism": "Plasmodium knowlesi strain H", "model_bigg_id": "iAM_Pk459"}, {"bigg_id": "f", "organism": "Chlamydomonas reinhardtii", "model_bigg_id": "iRC1080"}]}

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