Sabryr / ProteinFolding

MIT License

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psipred terminated error #3

Open Sabryr opened 3 years ago

Sabryr commented 3 years ago

buffer overflow detected : psipred terminated xx/1.0.0.2/RoseTTAFold/input_prep/makess.sh: line 19: 1324074 Aborted (core dumped) psipred $ID.mtx $DATADIR/weights.dat $DATADIR/weights.dat2 $DATADIR/weights.dat3 > $ID.ss Bad psipred pass1 file format! rm: cannot remove 'xxProteinFolding/RoseTTAFold/test/t000.msa0.a3m.csb.hhblits.ss2': No such file or directory

Sabryr commented 3 years ago

Fixed by making the following linbe to RoseTTAFold/input_prep

export BLASTMAT=/share/blast-2.2.26/data

!/bin/bash

export BLASTMAT=/cluster/software/RoseTTAFold/1.0.0.2/share/blast-2.2.26/data DATADIR="$CONDA_PREFIX/share/psipred_4.01/data" echo $DATADIR

i_a3m="$1" o_ss="$2"

Sabryr commented 3 years ago

This fix also solved #2