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Simon-Coetzee / motifBreakR

A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
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motifbreakR error SNPs from BED formatted file #45

Open sotudian opened 1 year ago

sotudian commented 1 year ago

Hello, First, thank you so much for making this outstanding software available to the bioinformatics community. I ran into this weird error from snps.from.file function:

> snps.mb.frombed_OURS <- snps.from.file(file = snps.bed.file,
+                                       search.genome = BSgenome.Hsapiens.UCSC.hg19,
+                                       format = "bed")

Error in paste0(sum(equal.to.ref), " user variants are the same as the reference genome ", : no slot of name "provider_version" for this object of class "BSgenome"

Could you kindly help me to sort it out?

yxmmnn commented 1 year ago

hello, have the question solved ? please give some suggestions thanks !

yxmmnn commented 1 year ago

hello, have the question solved ? please give some suggestions thanks !

Simon-Coetzee commented 1 year ago

I think this should work now with the most updated version available.