SingleR is a great package in helping assigning cell types to each cluster. However, when I install SingleR 2.0 and Single R development version in R 4.2.2, it popped up error message:
integrate_build.cpp: In function 'SEXPREC* integrate_build(Rcpp::IntegerVector, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, int)':
integrate_build.cpp:29:42: error: call of overloaded 'XPtr(Rcpp::Vector<19>::Proxy)' is ambiguous
PrebuiltXPtr curbuilt(prebuilt[r]);
^
In file included from /opt/R/R4.2.2/lib64/R/library/Rcpp/include/Rcpp.h:46,
from integrate_build.cpp:1:
/opt/R/R4.2.2/lib64/R/library/Rcpp/include/Rcpp/XPtr.h:113:5: note: candidate: 'Rcpp::XPtr<T, StoragePolicy, Finalizer, finalizeOnExit>::XPtr(const Rcpp::XPtr<T, StoragePolicy, Finalizer, finalizeOnExit>&) [with T = singlepp::BasicBuilder::Prebuilt; StoragePolicy = Rcpp::PreserveStorage; void (* Finalizer)(T*) = Rcpp::standard_delete_finalizer<singlepp::BasicBuilder::Prebuilt>; bool finalizeOnExit = false]'
XPtr(const XPtr& other) {
^~~~
In file included from /opt/R/R4.2.2/lib64/R/library/Rcpp/include/Rcpp.h:46,
from integrate_build.cpp:1:
/opt/R/R4.2.2/lib64/R/library/Rcpp/include/Rcpp/XPtr.h:104:14: note: candidate: 'Rcpp::XPtr<T, StoragePolicy, Finalizer, finalizeOnExit>::XPtr(T*, bool, SEXP, SEXP) [with T = singlepp::BasicBuilder::Prebuilt; StoragePolicy = Rcpp::PreserveStorage; void (* Finalizer)(T*) = Rcpp::standard_delete_finalizer<singlepp::BasicBuilder::Prebuilt>; bool finalizeOnExit = false; SEXP = SEXPREC*]'
explicit XPtr(T* p, bool set_delete_finalizer = true,
^~~~
/opt/R/R4.2.2/lib64/R/library/Rcpp/include/Rcpp/XPtr.h:78:14: note: candidate: 'Rcpp::XPtr<T, StoragePolicy, Finalizer, finalizeOnExit>::XPtr(SEXP) [with T = singlepp::BasicBuilder::Prebuilt; StoragePolicy = Rcpp::PreserveStorage; void (* Finalizer)(T*) = Rcpp::standard_delete_finalizer<singlepp::BasicBuilder::Prebuilt>; bool finalizeOnExit = false; SEXP = SEXPREC*]'
explicit XPtr(SEXP x) { checked_set(x); };
^~~~
make: *** [/opt/R/R4.2.2/lib64/R/etc/Makeconf:178: integrate_build.o] Error 1
ERROR: compilation failed for package 'SingleR'
* removing '/opt/R/R4.2.2/lib64/R/library/SingleR'
* restoring previous '/opt/R/R4.2.2/lib64/R/library/SingleR'
sessionInfo() returns the following message:
R version 4.2.2 (2022-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS: /opt/R/R4.2.2/lib64/R/lib/libRblas.so
LAPACK: /opt/R/R4.2.2/lib64/R/lib/libRlapack.so
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] processx_3.8.0 BiocManager_1.30.19 compiler_4.2.2
[4] R6_2.5.1 rprojroot_2.0.3 cli_3.4.1
[7] prettyunits_1.1.1 tools_4.2.2 withr_2.5.0
[10] curl_4.3.3 crayon_1.5.2 remotes_2.4.2
[13] callr_3.7.3 ps_1.7.2 pkgbuild_1.3.1
Can you check for me, please?
Thank you!
Jianxiang
Hi,
SingleR
is a great package in helping assigning cell types to each cluster. However, when I installSingleR 2.0
andSingle R development version
in R 4.2.2, it popped up error message:sessionInfo()
returns the following message:Can you check for me, please? Thank you! Jianxiang