Snitkin-Lab-Umich / regentrans

regentrans: R package for investigating regional pathogen transmission using genomic data
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Incorporate Rcpp get_genetic_flow() functions #59

Open shoffm opened 2 years ago

shoffm commented 2 years ago

Incorporate Rcpp versions of get_genetic_flow() from https://github.com/nateosher/RPTfast to speed up functions. Current problem is need for C++ compiler working with R to install package with Rcpp. Don't want that to be a barrier to use for the other functions in the package. Find a way to install Rcpp version of the function if they have compiler, or original version if not.