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SpatialHackathon / SpaceHack2023

MIT No Attribution
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Method Seurat #178

Closed shdam closed 10 months ago

shdam commented 10 months ago

Seurat method implemented with 1 config per method setting.

I couldn't find a way to use a custom neighborhood graph, so I chose to use Seurat::FindNeighbors (igraph SNN).

Closes #34

niklasmueboe commented 10 months ago

I think Seurat shouldn't use the neighborhood graph anyway because it serves as "non-spatial" control.

shdam commented 10 months ago

Seeing your stLearn comment, I will also tune k instead of providing resolution in the config.

niklasmueboe commented 10 months ago

Oh, good. Must have missed it here

shdam commented 10 months ago

Resolution tuning implemented