Update environment shell script

SpatialHackathon / SpaceHack2023

MIT No Attribution

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Update environment shell script #184

Closed Jieran-S closed 10 months ago

Jieran-S commented 10 months ago

all shell scripts are modified and formatted. The installation script scmeb_env.sh is a bit different. Their installation command is conda run -n scmeb_env R -e "install.packages('SC.MEB')" and others are just Rscript -e "<installation>". But if we set the conda env name strictly to scmeb_env there shouldn't be a problem.

shdam commented 10 months ago

You can simply change the scmeb_env.sh to say Rscript -e "install.packages('SC.MEB')" if you want to avoid setting a specific env name

Jieran-S commented 10 months ago

Sounds good! I commented out the old version and added the Rscript :)