This is a short issue-update pull request on some of the mistakes I previously omitted in the methods I implemented.
The yml file for DeepST and SEDR are not properly indented, leading to conda compile error when creating the environment based on those files. I previously thought it was an error for my conda till I realized it's the format of yml.
Forgot to push config folder of DeepST. It also surprised me how careless I was...(hopefully not still am).
I updated those files, tested the methods in the snakemake pipeline, and tested the script in all config conditions again...It should work now. Sorry for the hustle.
Hi,
This is a short issue-update pull request on some of the mistakes I previously omitted in the methods I implemented.
The yml file for DeepST and SEDR are not properly indented, leading to conda compile error when creating the environment based on those files. I previously thought it was an error for my conda till I realized it's the format of yml.
Forgot to push config folder of DeepST. It also surprised me how careless I was...(hopefully not still am).
I updated those files, tested the methods in the snakemake pipeline, and tested the script in all config conditions again...It should work now. Sorry for the hustle.