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:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
GNU General Public License v3.0
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[Request An Update]: AMRFinderPlus database version 2024-07-22.1 was released
#1024
erinyoung
opened
2 days ago
0
Update Freyja's Image monthly instead of daily
#1023
erinyoung
closed
3 days ago
0
Link htslib to libdeflate, improving performance.
#1022
pettyalex
opened
1 week ago
0
Link samtools against libdeflate for improved performance.
#1021
pettyalex
opened
1 week ago
0
Add GenoFLU 1.03
#1020
sage-wright
closed
2 weeks ago
3
Enable GCS, S3, and libdeflate support for bcftools
#1019
pettyalex
opened
2 weeks ago
4
[Bug]: bcftools is built without GCS, S3, or libdeflate support
#1018
pettyalex
opened
2 weeks ago
0
added dockerfile for pdata 1.28.1; corrected previous pangolin READMEs
#1017
kapsakcj
closed
2 weeks ago
5
adding assembly_snptyper version 0.1.1
#1016
erinyoung
opened
3 weeks ago
1
adding iqtree2 version 2.3.5
#1015
erinyoung
opened
4 weeks ago
0
adding usher version 0.6.3
#1014
erinyoung
opened
1 month ago
0
adding panqc version 0.4.0
#1013
erinyoung
opened
1 month ago
1
updated checkm to 1.2.3
#1012
erinyoung
closed
2 weeks ago
1
adding pango_aliasor version 0.3.0
#1011
erinyoung
opened
1 month ago
0
[Container Request]: toulligQC
#1010
erinyoung
opened
1 month ago
0
Update table2asn for 2024-06-18
#1009
erinyoung
closed
3 weeks ago
1
adding mafft version 7.526
#1008
erinyoung
closed
1 month ago
1
adding verkko version 2.1
#1007
erinyoung
closed
1 month ago
2
adding pygenomeviz version 1.1.0
#1006
erinyoung
closed
3 weeks ago
1
adding spades version 4.0.0
#1005
erinyoung
closed
1 month ago
1
[Request An Update]: virsorter2
#1004
erinyoung
opened
1 month ago
0
[Request An Update]: vigor4
#1003
erinyoung
opened
1 month ago
0
adding seqkit version 2.8.2
#1002
erinyoung
closed
3 weeks ago
1
[Request An Update]: sistr
#1001
erinyoung
opened
1 month ago
1
adding pycirclize version 1.6.0
#1000
erinyoung
closed
3 weeks ago
1
ncbi datasets version 16.22.1
#999
erinyoung
closed
3 weeks ago
1
adding multiqc version 1.22.3
#998
erinyoung
closed
3 weeks ago
1
add pangolin 4.3.1 and new version of pdata 1.28; minor CI update
#997
kapsakcj
closed
1 month ago
4
adding metaphlan version 4.1.1
#996
erinyoung
closed
3 weeks ago
1
adding ivar version 1.4.3
#995
erinyoung
opened
1 month ago
3
[Request An Update]: Auspice
#994
erinyoung
opened
1 month ago
0
[Request An Update]: Kaptive
#993
erinyoung
opened
1 month ago
0
gubbins version 3.3.5
#992
erinyoung
closed
1 month ago
1
update freyja to version 1.5.1
#991
erinyoung
closed
1 month ago
2
adding bowtie2 version 2.5.4
#990
erinyoung
closed
3 weeks ago
1
augur version 24.4.0
#989
erinyoung
closed
3 weeks ago
1
add clair3
#988
Kincekara
closed
1 month ago
1
Add container viridian
#987
soejun
closed
3 weeks ago
15
Update Raxml
#986
Kincekara
closed
1 month ago
4
Update iqtree2 Dockerfile - fix broken link
#985
Kincekara
closed
2 months ago
1
Update artic for new medaka models
#984
erinyoung
closed
1 month ago
2
adding sylph version 0.6.1
#983
erinyoung
closed
2 months ago
1
adding flye 2.9.4
#982
erinyoung
closed
2 months ago
1
rasusa version 2.0.0
#981
erinyoung
closed
2 months ago
1
adding parsnp 2.0.5
#980
erinyoung
closed
2 months ago
4
adding datasets version 16.15.0
#979
erinyoung
closed
2 months ago
1
adds jasmine
#978
Kincekara
closed
2 months ago
8
iqtree2 version 2.3.4
#977
erinyoung
closed
2 months ago
2
adding dragonflye version 1.2.1
#976
erinyoung
closed
1 month ago
2
updating freebayes to 1.3.8
#975
erinyoung
opened
2 months ago
0
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