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Starlitnightly / omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
https://starlitnightly.github.io/omicverse/
GNU General Public License v3.0
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Update gseapy #170

Open Rafael-Silva-Oliveira opened 3 hours ago

Rafael-Silva-Oliveira commented 3 hours ago

There is a dependency for gseapy==0.10.8 and the latest version of gseapy is 1.13. This makes it so that gseapy and omicverse can't really be installed on the same environment which is a shame since these tools complement each other. So much has changed in gseapy that using the version 0.10.8 is counterproductive; I'd suggest replacing gseapy with the latest version and change whatever needs to be changed in omicverse to be compatible with gseapy 1.13 instead

Starlitnightly commented 2 hours ago

I remember i have removed the dependency of gseapy in 1.6.7 of omicverse