Open konopinski opened 1 year ago
Hi @konopinski,
The SmallTestData.structure
in not correctly formatted for fastStructure
(hence, the error you are seeing). The file BigTestData.str
is correctly formatted for use with fastStructure
though. fastStructure
is very picky with the input format it uses.
Also, when using your own data, don't forget to check the generated logs to understand what went wrong.
Hope this helps.
Hi, I tried to run the program on my data which is snps from stacks pipeline but failed. So I used test data and have the same error. The whole execution is below
I'm running it on Ubuntu 22.04 with both python2 and python3 installed (thus I came across
structure_threader
;) ) Is there any hope I will finally get the structure results? In desperation I started running dapc but without any information returned to the screen I don't even know if it works. Gosh I love Structure! It was so nice with msats... Cheers, Maciek