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Sung-Huan
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ANNOgesic
ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes
http://annogesic.readthedocs.io/en/latest/index.html
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sRNA target prediction error
#40
cmetadea
closed
9 months ago
5
annogesic from nanopore transcriptomic output
#39
cmetadea
closed
10 months ago
2
annogesic tss_ps: understanding the "--condition_names" error
#38
kmuench
closed
10 months ago
1
Use normalized or raw coverage files for ANNOgesic?
#37
kmuench
closed
10 months ago
1
annogesic: error: unrecognized arguments: --tsspredator_jar TSSpredator-1.1beta.jar
#36
KMS-Rock
closed
1 year ago
3
TSSpredator-1.06.jar not found during Docker build
#35
vdejager
closed
1 year ago
1
tex_notex_libs formatting
#34
gcabebe
closed
1 year ago
4
TAP-only (no TEX) dRNA-seq datasets
#33
simone-pignotti
closed
1 year ago
2
TSSpredator error
#32
Rexomania1
closed
2 years ago
6
Read-only file system
#31
sternp
closed
2 years ago
1
--tex_notex_libs was assinged incorrectly
#30
sternp
closed
2 years ago
6
Installation directory
#29
sternp
closed
2 years ago
0
optimize_tss_ps error:TypeError: int() argument must be a string, a bytes-like object or a number, not 'NoneType'
#28
Blehri
closed
2 years ago
6
Update tutorial.rst
#27
RabeaMue
closed
2 years ago
0
Path to instal sgemehl in get_package_database.sh is old
#26
g1o
closed
2 years ago
1
optimization of TSS error
#25
HaoyuZhiShiJiee
closed
2 years ago
8
Merging results srna_target, wrong column names
#24
gprezza
closed
3 years ago
2
Predicted sRNAs seem too long
#23
StephenLi55
closed
3 years ago
1
Transcript detection error
#22
gjh34
closed
3 years ago
7
sRNA prediction error
#21
Rexomania1
closed
4 years ago
14
too many warnings in target prediction
#20
elhossary
closed
4 years ago
6
Multiple data set
#19
Rexomania1
closed
4 years ago
2
Promoter detection ,problem with FASTA file
#18
IgnatiusPang
closed
4 years ago
5
UTR detection error, do not know how to resolve.
#17
IgnatiusPang
closed
4 years ago
7
gff3 error
#16
Rexomania1
closed
4 years ago
11
Transcript command, Comparison step, division by zero error
#15
IgnatiusPang
closed
4 years ago
3
Error in sRNA_target prediction
#14
elhossary
closed
4 years ago
1
Error in annotation transfer subcommand
#13
elhossary
closed
4 years ago
3
TSSpredator parameter defaults
#12
apredeus
closed
4 years ago
4
Transcript detection
#11
StephenLi55
closed
4 years ago
32
The use of paramters produced by optimize TSS/PS feature
#10
elhossary
closed
4 years ago
7
sRNA prediction from RNA-seq data
#9
StephenLi55
closed
4 years ago
1
ERROR: int is not iterable, in promoter prediction subcommand
#8
elhossary
closed
5 years ago
2
Missing file error where it is generated temprory by the pipeline in sRNA detection subcommand
#7
elhossary
closed
5 years ago
2
TSS prediction fails with some cases where the gff files has more than one accession numbers
#6
elhossary
closed
5 years ago
2
Manually annotated GFF
#5
apredeus
closed
5 years ago
5
Wig file creation and normalization
#4
apredeus
closed
5 years ago
7
Conda recipe?
#3
apredeus
closed
5 years ago
2
Improve error messages
#2
konrad
closed
7 years ago
0
Minor rearrangements and cleaning up
#1
konrad
closed
8 years ago
0