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Sydney-Informatics-Hub / Fastq-to-BAM

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi
GNU General Public License v3.0
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align_make_input.sh lib_diff is Initialised Empty and Never Set Otherwise #12

Closed DarioS closed 2 years ago

DarioS commented 3 years ago

On line 51, lib_diff='' is declared, it is never set to anything else and is checked on line 64 if [ "$lib_diff" ].

calizilla commented 2 years ago

Thanks Dario. This was a relic from OSCC cohort which had 2 libraries per sample, the script and config was customised to address this. The $lib_diff variable has now been removed.