All consensus assemblies being polished by Medaka, even those that fail the check

Sydney-Informatics-Hub / ONT-bacpac-nf

Bacterial profiling workflow for ONT data, written in Nextflow.

GNU General Public License v3.0

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All consensus assemblies being polished by Medaka, even those that fail the check #23

Closed georgiesamaha closed 4 days ago

georgiesamaha commented 4 months ago

Medaka is polishing consensus assemblies for all samples, even those that have failed and reverted to Flye as backup. Need to rewrite the input channel to account for this.