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SydneyBioX / CellSPA

Cell Segmentation Performance Assessment
https://sydneybiox.github.io/CellSPA/
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`rgeos` and `maptools` are no longer available on CRAN #1

Open nick-robo opened 10 months ago

nick-robo commented 10 months ago

Consider using terra or sf.

yulijia commented 1 month ago

It doesn't seem like it is fixed.

devtools::install_github( "SydneyBioX/CellSPA")

Installing package into '/enna/nobackup/lijiay/R/x86_64-pc-linux-gnu-library/4.4' (as 'lib' is unspecified) ERROR: dependencies ‘rgeos’, ‘maptools’ are not available for package ‘CellSPA’

  • removing ‘/enna/nobackup/lijiay/R/x86_64-pc-linux-gnu-library/4.4/CellSPA’ Warning message: In i.p(...) : installation of package '/tmp/Rtmp4z1fRC/file24db3e2bc6c2f9/CellSPA_0.1.0.tar.gz' had non-zero exit status
yulijia commented 1 month ago

Thanks @ashsolano We will keep this open as a reminder to fix the dependency problem when the author has time. Most of the functions in this package can be used without these two dependencies, and you can also copy the function to run it in R without installation. Besides, you can also install the development version from https://github.com/SydneyBioX/CellSPA/tree/test_dm, where these dependency problems have been fixed.

ashsolano commented 1 month ago

Thanks for pointing this out @yulijia! Didn't realize that this had been fixed in the development version- will make use of this instead :)