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SynBioDex / libSBOLj

Java Library for Synthetic Biology Open Language (SBOL)
Apache License 2.0
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Error converting GenBank files with spaces in feature types #607

Open cjmyers opened 4 years ago

cjmyers commented 4 years ago

The following exception on the attached file below occurs when converting a GenBank file with spaces in the feature type field.

Error: java.lang.NumberFormatException: For input string: "sequence" at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65) at java.lang.Integer.parseInt(Integer.java:580) at java.lang.Integer.parseInt(Integer.java:615) at org.sbolstandard.core2.GenBank.read(GenBank.java:1457) at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:700) at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:625) at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:512) at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:437) at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:422) at org.sbolstandard.core2.SBOLValidate.validate(SBOLValidate.java:2725) at org.sbolstandard.core2.SBOLValidate.validate(SBOLValidate.java:2656)

laci.zip