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SysBioChalmers / GECKO

Toolbox for including enzyme constraints on a genome-scale model.
http://sysbiochalmers.github.io/GECKO/
MIT License
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Bug: check if DLKcat.tsv has actually been run through DLKcat #278

Closed HossFir closed 1 year ago

HossFir commented 1 year ago

@edkerk Description:

I think this line should be uncommented. Otherwise, the Kcats found in the DLKcat.tsv were equal to NaN. (it was previously uncommented in the previous GECKO 3.0.0).

https://github.com/SysBioChalmers/GECKO/blob/ea9e2ef56673f50b764a183fbe1a6d746f64cff3/protocol.m#L102

edkerk commented 1 year ago

Otherwise, the Kcats found in the DLKcat.tsv were equal to NaN.

Otherwise DLKcat does not run, and DLKcat.tsv is just the original input file. Will implement a check for this, and uncomment that line (which was commented ou to avoid Docker starting every time during testing).