Bug: Fix compatibility running ecFSEOF with GECKO3 models

SysBioChalmers / GECKO

Toolbox for including enzyme constraints on a genome-scale model.

http://sysbiochalmers.github.io/GECKO/

MIT License

66 stars 51 forks source link

Bug: Fix compatibility running ecFSEOF with GECKO3 models #301

Closed ae-tafur closed 1 year ago

ae-tafur commented 1 year ago

Main improvements in this PR:

Fix compatibility in ecFSEOF to GECKO3 models
Change name function simulateGrowth to follow #229
Model adapter class was added to use userData/model/output as default folder to store results

I hereby confirm that I have:

[ ] Selected develop as a target branch (top left drop-down menu)

github-actions[bot] commented 1 year ago

This PR has been automatically tested with GH Actions. Here is the output of the tests:

 
Running geckoCoreFunctionTests
Model-specific DLKcat input stored at /home/m/actions-runner/_work/GECKO/GECKO/test/unit_tests/ecTestGEM/data/DLKcat_input_test.tsv
Limit has been reached. Protein P5 seems to be problematic. Consider changing the kcat.
Done geckoCoreFunctionTests
__________

Note: In the case of multiple test runs, this post will be edited.