fix: calculateFfactor if paxDB has taxID !4 digits

SysBioChalmers / GECKO

Toolbox for including enzyme constraints on a genome-scale model.

http://sysbiochalmers.github.io/GECKO/

MIT License

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Closed edkerk closed 1 year ago

edkerk commented 1 year ago

Fixes:
- 'calculateFfactor` handle data from PAXdb if the taxonomic ID is not 4 digits long (solves #345)

[X] This PR has develop as target branch, and will be resolved with a squash-merge.
[ ] This PR has main as target branch, and will be resolved with a merge commit.

github-actions[bot] commented 1 year ago

This PR has been automatically tested with GH Actions. Here is the output of the tests:

 
Running geckoCoreFunctionTests
Done geckoCoreFunctionTests
__________

Note: In the case of multiple test runs, this post will be edited.

edkerk commented 1 year ago

I tested it by replacing all 4932. in tutorials/full_ecModel/data/paxDB.tsv with longer or shorter sequences, and rerunning