The default objective for Mouse-GEM is maximization of the "biomass components" reaction (MAR00021). The model also includes the human-specific biomass reaction (MAR13082). Although the human-specific biomass reaction (MAR13082) is not set as the objective, it should be closed (lb = ub = 0) by default so that only one biomass reaction is "active" by default.
Note: this fix should probably also apply to Rat-GEM and the other standard-GEM animal models.
Expected feature/value/output:
ub of MAR13082 set to zero.
Current feature/value/output:
ub of MAR13082 is 1000.
I hereby confirm that I have:
[X] Done this analysis in the master branch of the repository
[X] Checked that a similar issue does not exist already
Description of the issue:
The default objective for Mouse-GEM is maximization of the "biomass components" reaction (MAR00021). The model also includes the human-specific biomass reaction (MAR13082). Although the human-specific biomass reaction (MAR13082) is not set as the objective, it should be closed (lb = ub = 0) by default so that only one biomass reaction is "active" by default.
Note: this fix should probably also apply to Rat-GEM and the other standard-GEM animal models.
Expected feature/value/output:
ub
of MAR13082 set to zero.Current feature/value/output:
ub
of MAR13082 is 1000.I hereby confirm that I have:
master
branch of the repository