This repository contains the latest version of Mouse-GEM, a mouse genome-scale metabolic model.
H. Wang, J. L. Robinson, P. Kocabaş, J. Gustafsson, M. Anton, P.-E. Cholley, et al. Genome-scale metabolic network reconstruction of model animals as a platform for translational research. PNAS 118, e2102344118 (2021). doi.org/10.1073/pnas.2102344118
Utilisation: multi-omics integrative analysis, predictive simulation
Field: metabolic-network reconstruction
Type of Model: reconstruction, curated
Model source: Human-GEM
Omic source: genomics; metabolomics
Taxonomic name: Mus musculus
Taxonomy ID: 10090
Genome ID: GCA_000001635.8
Metabolic System: general metabolism
Tissue:
Bioreactor:
Cell type:
Cell line:
Condition: generic metabolism
Taxonomy | Template Model | Reactions | Metabolites | Genes |
---|---|---|---|---|
Mus musculus | Human-GEM | 13020 | 8373 | 2959 |
Mouse-GEM.mat
(Recommended if on main
branch)
load()
and save()
functions.Mouse-GEM.xml
(SBML format)
importModel.m
function (from RAVEN Toolbox)exportModel.m
function (from RAVEN Toolbox)Contributions are always welcome! Please read the contributing guidelines to get started.