Feature/ci tests - Githubissues

TRON-Bioinformatics / EasyFuse

EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.

GNU General Public License v3.0

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Feature/ci tests #35

Closed priesgo closed 1 year ago

priesgo commented 1 year ago

This PR introduces several changes:

Python dependency management via requirements.txt
Automate unit and integration in CI environment
Package Python code
Replace custom logging by logzero library
Code reformat using PyCharm
Rermove dead code with Vulture
Integrate R code and RF model into package
Get rid of the concept of module_dir set in the configuration