Teichlab SpatialDE issues

Teichlab / SpatialDE

Test genes for Spatial Variation

MIT License

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issues

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fix bug caused by syntax error

#43 chenghui03 opened 6 months ago
0
SVD did not converge in Linear Least Squares

#42 rocketeer1998 opened 7 months ago
1
AttributeError: Module 'scipy' has no attribute 'arange'

#41 Zhixuan-Jing opened 8 months ago
6
Fix Multi-dimensional indexing (e.g. obj[:, None]) is no longer supported

#40 imran-aifi opened 9 months ago
0
it seems that this is a bug in SpatialDE

#39 kidzeru opened 10 months ago
0
Multi-dimensional indexing (e.g. `obj[:, None]`) is no longer supported.

#38 Scoott opened 1 year ago
3
multi-dimensional indexing (obj[:, None]) is no longer supported

#37 hanrong498 closed 1 year ago
1
Duplicate entry in results table if max_ll is the same across two model runs

#36 grst opened 1 year ago
0
Error: Unable to allocate 932. GiB for an array with shape (353762, 353762)

#35 bmill3r opened 1 year ago
1
What to do when `delta_ELBO` never converges

#34 sayadennis opened 1 year ago
1
Optimized code using numpy vectorizations

#33 ajinkya-kulkarni opened 1 year ago
0
Used vectorization to make the code faster

#32 ajinkya-kulkarni opened 1 year ago
0
How do we restrict the number of cores used?

#31 sayadennis closed 1 year ago
2
hello ,canyou help me ?

#30 1366409175 opened 1 year ago
1
hello,can you help me ?

#29 1366409175 opened 1 year ago
0
Large datasets

#28 milka1g opened 1 year ago
0
Cannot pull lfs

#27 emkahuda closed 2 years ago
1
SVD did not converge in Linear Least Squares

#26 anurendra closed 2 years ago
2
over its data quota

#25 gouxiaojuan closed 2 years ago
0
adapting the method for higher dimensions

#24 j-bac closed 2 years ago
6
Potential redundancy in computation of `ln_P_mu` function

#23 marmarmarmar opened 3 years ago
0
AEH `fit_patterns` always outputs nan

#22 alam-shahul closed 3 years ago
1
How To Solve KeyError: “None of [Index([..], dtype='object')] are in the [columns]”/KeyError(f“None of [{key}] are in the [{axis_name}]”)

#21 lu003 closed 3 years ago
0
FloatingPointError

#20 ngocphuongtran opened 3 years ago
0
Maybe a typo in R code?

#19 WT215 opened 3 years ago
0
p value

#18 sokratiag opened 4 years ago
2
Minor proposal on line 247

#17 kant closed 4 years ago
1
Syntax issue on line 88

#16 kant closed 4 years ago
1
no convergence in AEH

#15 jon-xu closed 4 years ago
2
how to pick l in AEH

#14 jon-xu closed 4 years ago
2
qval = 0.00

#13 jon-xu closed 4 years ago
1
sign_results = results.query('qval < 0.5')

#12 jon-xu closed 4 years ago
1
README fixes

#11 flying-sheep closed 5 years ago
1
Looks like cellBoundaries.mat is missing from MERFISH

#10 vipulsinghal02 closed 5 years ago
2
Import logsumexp from scipy.special

#9 flying-sheep closed 5 years ago
1
Add long_description to setup.py

#8 flying-sheep closed 5 years ago
1
pd.concat(sort=True) requires pandas>=0.23

#7 gokceneraslan closed 5 years ago
1
DEBUG level for logging

#6 gokceneraslan closed 5 years ago
1
Meaning of columns in sample info file

#5 abayega closed 6 years ago
1
Determining optimal C for AEH

#4 dpcook opened 6 years ago
3
Softmax instability?

#3 vals closed 6 years ago
7
Heads-up on git lfs

#2 gokceneraslan closed 6 years ago
3
Minimum number of samples?

#1 abayega closed 6 years ago
1