how to pick l in AEH - Githubissues

Teichlab / SpatialDE

Test genes for Spatial Variation

MIT License

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Closed jon-xu closed 4 years ago

jon-xu commented 4 years ago

Hi,

I'm wondering how to pick l in AEH from the result of running: sign_results['l'].value_counts()

Thanks for clarification!

vals commented 4 years ago

You should pick a value that reflects most of the significant genes.

jon-xu commented 4 years ago

so in your example:

1.135190 11 1.907609 4 0.675535 4 3.205604 1 Name: l, dtype: int64

How do we derive ~1.5 and choose 1.8, please?