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TileDB-Inc
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TileDB-VCF
Efficient variant-call data storage and retrieval library using the TileDB storage library.
https://tiledb-inc.github.io/TileDB-VCF/
MIT License
82
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13
forks
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Setuptools SCM version file
#742
dudoslav
closed
1 day ago
1
Test removing pyarrow pin
#741
gspowley
opened
1 day ago
0
Build with numpy 2
#740
jdblischak
opened
1 day ago
6
using AES encryption
#739
lynnjo
opened
5 days ago
2
Bump nightly build release branch to 2.24
#738
jdblischak
closed
1 week ago
0
Bump urllib3 from 1.26.18 to 1.26.19 in /apis/aws-batch
#737
dependabot[bot]
opened
1 week ago
0
Bump pyarrow from 11 to 14.0.1 in /ci/nightly
#736
dependabot[bot]
opened
1 week ago
0
Migrate macOS CI to macos-12 runner
#735
jdblischak
closed
1 week ago
0
Hotfix: pin numpy < 2
#734
jdblischak
closed
1 week ago
3
Refactoring/code improvements for variant stats v3
#733
awenocur
closed
1 week ago
0
Upgrade Embedded to 2.24.1
#732
awenocur
closed
22 hours ago
3
Add Hail-like AC, AN, and AF computation to variant stats V3
#731
awenocur
opened
1 week ago
0
The nightly build job failed on Sunday (2024-06-16)
#730
github-actions[bot]
closed
1 week ago
13
The nightly build job failed on Wednesday (2024-06-12)
#729
github-actions[bot]
closed
3 weeks ago
2
Add Python 12 runtime
#728
awenocur
opened
3 weeks ago
0
Upgrade Embedded to 2.24.0
#727
awenocur
closed
3 weeks ago
0
The nightly build job failed on Wednesday (2024-05-29)
#726
github-actions[bot]
closed
1 month ago
6
Write additional VCF variant stats during ingestion
#725
gspowley
opened
1 month ago
0
Lazily import dask
#724
gspowley
closed
1 month ago
0
Bump nightly build release branch to 2.23
#723
jdblischak
closed
1 month ago
0
Remove lines from CLI test that fail on nightly
#722
awenocur
closed
1 month ago
1
The nightly build job failed on Wednesday (2024-05-15)
#721
github-actions[bot]
closed
1 month ago
0
Add switch for variant stats array version
#720
awenocur
closed
1 month ago
0
Sample stats improvements
#719
gspowley
closed
1 month ago
3
Update to Embedded 2.23.0
#718
awenocur
closed
1 month ago
0
The new scikit-build-core setup copies external shared objects into Python wheel
#717
jdblischak
opened
2 months ago
4
Set java/spark version from git tag
#716
gspowley
closed
2 months ago
0
Update java/spark for version 0.31.1
#715
gspowley
closed
2 months ago
0
[Backport release-0.31] Read BED files stored as TileDB files (#712)
#714
gspowley
closed
2 months ago
0
[Backport release-0.31] Failed to backport #712
#713
github-actions[bot]
closed
2 months ago
0
Read BED files stored as TileDB files
#712
gspowley
closed
2 months ago
0
[Backport release-0.31] Sample stats improvements (#708)
#711
gspowley
closed
2 months ago
0
[Backport release-0.31] Failed to backport #708
#710
github-actions[bot]
closed
2 months ago
0
[Backport release-0.31] Fix an issue reading BED arrays from tiledb URIs
#709
github-actions[bot]
closed
2 months ago
0
Sample stats improvements
#708
gspowley
closed
2 months ago
2
Some questions about functionality
#707
andreaswallberg
opened
2 months ago
3
Fix an issue reading BED arrays from tiledb URIs
#706
gspowley
closed
2 months ago
0
The nightly build job failed on Saturday (2024-04-20)
#705
github-actions[bot]
closed
2 months ago
1
Java/Spark 0.30.1
#704
awenocur
closed
2 months ago
0
Use HTSlib 1.19.0 on Windows.
#703
teo-tsirpanis
closed
2 months ago
0
Fix python cmake issue
#702
gspowley
closed
2 months ago
3
Update python build system
#701
gspowley
closed
2 months ago
9
Bump nightly release branch to 2.21
#700
jdblischak
closed
2 months ago
2
Array size utility script
#699
gspowley
closed
2 months ago
0
Writer changes for Variant Stats
#698
awenocur
closed
1 month ago
1
Update backport action
#697
gspowley
closed
2 months ago
0
Open vcf_header and data arrays in parallel
#696
gspowley
closed
2 months ago
0
update Embedded to 2.21.2
#695
awenocur
closed
2 months ago
0
The nightly build job failed on Friday (2024-04-05)
#694
github-actions[bot]
closed
2 months ago
5
Do not disable vcpkg in nightly builds.
#693
teo-tsirpanis
closed
3 months ago
1
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