Blink Pytorch Code

[ahmed-alhindawi]

Hello all,

Based on recent comments I thought I would give the blink training code pathways an overhall. Please do not that the tensorflow implementation is still the reference as that was what was used for the paper - this is merely a somewhat PyTorchesque recreation.

• removed redundant pathways
• abstracted validation and training methods into a "shared_step" method
• added training metrics like Precision, Recall, Specificity, F1 during training and validation
• H5 file now opens during loading (better performance)
• Fixed code to be compatible with latest pytorch lightning version==1.4.9 and torchvision=0.10
• This also fixes #108

Let me know what you think.

[Tobias-Fischer]

Thanks for that, @ahmed-alhindawi! Looks good to me, but I didn't run it. Happy to merge once you confirm that we get sensible results when training and evaluating on RT-BENE.

Thanks again, Tobi

[ahmed-alhindawi]

It certainly does…

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Thanks for that, @ahmed-alhindawihttps://github.com/ahmed-alhindawi! Looks good to me, but I didn't run it. Happy to merge once you confirm that we get sensible results when training and evaluating on RT-BENE.

Thanks again, Tobi

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