Trinotate Trinotate.github.io issues

Trinotate / Trinotate.github.io

web documentation for Trinotate

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issues

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use trinotate without signalP and TMHMM ouput files

#71 nargisbashir opened 3 months ago
1
sqlite database ok, but report is empty

#70 matevzl533 opened 5 months ago
10
Trinotate Installation

#69 nisntraj opened 7 months ago
3
Error: column transcript_id is not unique

#68 vccarneiro closed 1 year ago
3
prot_id and related columns do not export

#67 FarrahKhan1400 opened 2 years ago
2
Suggestion: Auto pipeline transdecoder.pep

#66 lucaskbobadilla opened 2 years ago
0
Unable to create boilerplate sqlite

#65 hayden-waller opened 2 years ago
1
Can I add the annotation of new genotypes to an already built database?

#64 felipevzps closed 2 years ago
2
Gene/transcript map for non-Trinity assembly

#63 incoreygible closed 2 years ago
2
perl: warning: Setting locale failed.

#62 glmaala opened 2 years ago
1
No eggnog annotation in Trinotate report excel !

#61 ppdpg closed 2 months ago
2
Error 404 with Build_Trinotate_Boilerplate_SQLite_db.pl connecting to data.broadinstitute.org

#60 mmcardozo opened 2 years ago
1
Trinotate SQlite error

#59 miguel1cifu opened 2 years ago
0
Trinotate Annotation Report: No PFAM

#58 brittonstrickland closed 2 years ago
23
Trinotate Sqlite: Error: column transcript_id is not unique Error, cmd: echo "pragma journal_mode=memory

#57 geethavenk opened 3 years ago
3
DBD::SQLite problem running Build_Trinotate_Boilerplate_SQLite_db.pl

#56 Brent-Saylor-Canopy opened 3 years ago
4
Error while running hmmscan with autoTrinotate.pl

#55 pbluescript opened 3 years ago
2
Question about Build_Trinotate_Boilerplate_SQLite_db.pl

#54 Genan-blur opened 3 years ago
4
Issues with the Trinotate.sqlite file in TrinotateWEB

#53 bm-silva opened 3 years ago
0
Trinotate_report.xls

#52 berumeng opened 3 years ago
4
Error, cmd: /Trinotate line 126.

#51 zhang144999 opened 3 years ago
0
Error at ../autoTrinotate.pl line 109

#50 sivajean opened 3 years ago
0
can we import direct isoform to cDNA blastn alignment results

#49 splaisan closed 3 years ago
2
xls report does not open - formatting error

#48 rafinhacp closed 3 years ago
2
Issue uploading isoform expression data

#47 rafinhacp closed 3 years ago
1
problems with Trinotate and sqlite

#46 rgast opened 3 years ago
1
can't exec superScaffoldGenerator.pl

#45 niconm89 opened 3 years ago
0
SignalP 4.1 silently fails with default Transdecoder fasta headers

#44 halocaridina closed 3 years ago
6
Unable to locate SQLite Database file

#43 williamsonjpa closed 3 years ago
3
Question about Trinotate.web

#42 Genan-blur opened 3 years ago
8
Can I reuse the trinotate.sqlite database across multiple assemblies from different samples?

#41 davidecarlson closed 3 years ago
2
Hard to understand KEGG annotations

#40 Thijmen18 opened 4 years ago
3
Software error:Can't locate HTML/Template.pm in @INC (you may need to install the HTML::Template module)

#39 sraj214 opened 4 years ago
4
NOG database is not available - link is dead

#38 jgrzadziel opened 4 years ago
2
Version of UniProt and Pfam databases

#37 GatorShan opened 4 years ago
3
Unknown Platform : Running RNAHMMER

#36 sraj214 opened 4 years ago
3
Faulty eggnog database url

#35 jlastoll closed 4 years ago
1
Issue with parsing names of blast hits in the final report table

#34 jcoludar closed 4 years ago
6
details for report field sprot_Top_BLASTX_hit

#33 sdwien opened 4 years ago
1
cannot locate report database file

#32 depac opened 4 years ago
2
integrate sigP 5.0

#31 brianjohnhaas opened 4 years ago
2
problem with tmhmm

#30 ghost closed 4 years ago
1
sample files.txt preparation for import_expression_and_DE_results.pl

#29 giggu98 closed 4 years ago
3
Annotation Summary to gtf/gff

#28 austinhpatton opened 4 years ago
1
problem with sqlite

#27 JiaZhong28 opened 4 years ago
1
GO annotation

#26 JiaZhong28 closed 4 years ago
0
Starting fasta file

#25 mclec opened 4 years ago
0
SignalP link in wiki docs defaults to v5.0

#24 bifxcore opened 4 years ago
0
Loading Swiss-Prot database is throwing format warning

#23 bifxcore closed 4 years ago
2
Installation doc update rnammer test

#22 bifxcore opened 4 years ago
0