UCL TLOmodel issues - Githubissues

UCL / TLOmodel

Epidemiology modelling framework for the Thanzi la Onse project

https://www.tlomodel.org/

MIT License

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issues

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Generate chain of events for individuals

#1468 marghe-molaro opened 12 hours ago
0
Population dataframe accesses in `HSI_Contraception_FamilyPlanningAppt.EXPECTED_APPT_FOOTPRINT` are performance bottleneck

#1467 matt-graham opened 6 days ago
0
Show total time in flat profile output

#1466 matt-graham opened 6 days ago
1
Should we switch to using DVC + Azure from Git LFS for storing resource files?

#1465 matt-graham opened 1 week ago
4
Update minimum Python version to 3.11 in project metadata

#1464 matt-graham closed 1 week ago
0
Enable all pycodestyle and isort rules in Ruff and fix violations

#1463 matt-graham opened 1 week ago
0
Development of cohort model for maternal/newborn health analysis

#1462 joehcollins opened 2 weeks ago
4
Remove generation of coverage report in tests workflow

#1461 matt-graham closed 1 week ago
1
Use `pytest-results-actions` to generate test result summary

#1460 matt-graham closed 1 week ago
1
Use `isinstance` instead of checking type equality

#1459 matt-graham closed 3 weeks ago
1
Move from Dropbox to Sharepoint (Consumable scripts)

#1458 sakshimohan opened 3 weeks ago
1
`Summarise` function to summarise results -- with more flexibilitythan previous utility function

#1457 tbhallett opened 4 weeks ago
0
scale-up VMMC from 2019 onwards to match data

#1456 tdm32 opened 1 month ago
1
PR to record the prevalence of disease/condition, still births, neonatal death, maternal mortality

#1455 RachelMurray-Watson opened 1 month ago
2
Secular Time-trend in Availability of Consumables

#1454 tbhallett opened 1 month ago
0
add TB culture HSI

#1453 tdm32 opened 1 month ago
3
Allow declaring and retriveing names associated with draws in the `Scenario` class

#1452 tbhallett opened 2 months ago
0
Save a label for the draw when using `Scenario` class

#1451 tbhallett opened 2 months ago
0
Update contributors

#1450 tbhallett closed 2 months ago
7
Use isinstance instead of equality comparison on type in `tlo.analysis.utils`

#1449 matt-graham closed 3 weeks ago
1
Make `BitsetHandler` variable width and a pandas extension

#1448 willGraham01 closed 1 week ago
4
Artificial cohort required

#1447 RachelMurray-Watson closed 2 months ago
0
Fix non-determinism in equipment ever used log entry

#1446 matt-graham closed 1 week ago
0
Fix logging of unrecognised consumables item codes

#1445 matt-graham closed 1 week ago
0
Update Consumable availability (New OpenLMIS data)

#1444 sakshimohan opened 2 months ago
2
Let the Scale-up of HIV, TB, Malaria services go to "MAXIMAL" levels (as well as target levels)

#1443 tbhallett closed 2 months ago
0
overwriting categorical type parameters in analysis script not working as expected

#1442 tdm32 opened 2 months ago
0
Let the Scale-up of HIV, TB, Malaria services go to "MAXIMAL" levels (as well as target levels)

#1441 tdm32 closed 2 months ago
1
Warning generated about logged columns

#1440 tbhallett opened 2 months ago
1
Updates to the Horizontal and Vertical Programs Analysis

#1439 tbhallett closed 2 months ago
0
HTM impact potentially affected by other scenario settings

#1438 tdm32 closed 2 months ago
0
Fix over-allocation of Bed Days in #1399

#1437 willGraham01 closed 1 month ago
1
Allow `PROPERTIES` to set a default value, and Modules to auto-initialise their DF columns to these values

#1436 willGraham01 closed 3 weeks ago
2
Log entry for `EquipmentEverUsed_ByFacilityID` non-deterministic

#1435 matt-graham closed 1 week ago
0
Log entry for consumables `item_codes_not_recognised` in health system log is non-deterministic

#1434 matt-graham closed 1 week ago
0
Fix CMD-HIV Interaction

#1433 tbhallett closed 2 months ago
0
use of xlsx

#1432 EvaJanouskova closed 2 months ago
2
Check equipment use logged by the model

#1431 sakshimohan opened 2 months ago
8
Module to record prevalence

#1430 RachelMurray-Watson opened 2 months ago
0
Refactor setting of `PROPERTIES` columns across `Module`s

#1429 willGraham01 closed 2 months ago
3
Lots of `Modules` perform the same initial setting of DataFrame columns in `pre_initialise_simulation`

#1428 willGraham01 opened 2 months ago
1
`bladder_cancer` polling runs at wrong frequency?

#1427 willGraham01 opened 2 months ago
1
Refactor cancer modules to reduce code duplication

#1426 willGraham01 closed 2 months ago
1
Convert excel ResourceFiles to csv - Add a method to read converted files

#1425 mnjowe opened 2 months ago
3
Update run-profiling.yaml with note about new token

#1424 willGraham01 closed 2 months ago
0
Use `IndividualDetails` context to speed up `SymptomManager.has_what`

#1423 willGraham01 closed 2 months ago
7
Adding script for generating table of parameters

#1422 matt-graham closed 2 weeks ago
5
Some module parameters do not have a value defined

#1421 matt-graham opened 2 months ago
0
`summarize` to (optionally) use MEDIAN instead of MEAN as central summary

#1420 tbhallett opened 2 months ago
0
Parameter Table

#1419 tbhallett closed 2 weeks ago
4