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UCLOrengoGroup
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cath-alphaflow
GNU Lesser General Public License v2.1
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Simple example for classifying any custom PDB
#70
johnnytam100
opened
2 months ago
0
Make choppings work with (non-numeric, non-sequential) pdb residue labels
#69
sillitoe
closed
9 months ago
0
fix globularity from pdb dir
#68
sillitoe
closed
1 year ago
0
Process globularity from directory of PDB files (without chopping)
#67
sillitoe
closed
1 year ago
0
Add globularity tests before a refactor
#66
sillitoe
closed
1 year ago
0
Add globularity measure for generic PDB files
#65
sillitoe
closed
1 year ago
0
Add script and workflow to combine results
#64
sillitoe
opened
1 year ago
0
Integrated file workflow as alt to database
#63
Rachel-Alcraft
closed
1 year ago
0
CS benchmarking
#62
robertvi
closed
1 year ago
0
Is there any document for this repo?
#61
KatarinaYuan
closed
1 year ago
1
Load AF files to mongodb
#60
sillitoe
closed
1 year ago
0
Add globularity module and README.manual_run.md
#59
bordin89
closed
1 year ago
0
Improve dataset provider
#58
sillitoe
closed
1 year ago
0
Some test workflow integration with database and files functions
#57
Rachel-Alcraft
closed
1 year ago
0
Integrate new CLI for file vs db
#56
Rachel-Alcraft
closed
1 year ago
1
Gh044 testflow
#55
Rachel-Alcraft
closed
1 year ago
0
Compare md5 crhs
#54
bordin89
closed
1 year ago
0
filter out uniprot_domain_id header
#53
robertvi
closed
1 year ago
0
Allow dataset files to be created from DB / CRH files
#52
sillitoe
closed
1 year ago
0
Add command to calculate MD5 lookup
#51
sillitoe
closed
1 year ago
0
Gh049 oracledocs
#50
Rachel-Alcraft
closed
1 year ago
0
Document new oracle lib and add test script
#49
Rachel-Alcraft
closed
1 year ago
1
Dssp installation info added to readme
#48
Rachel-Alcraft
closed
1 year ago
0
Add dssp installation info
#47
Rachel-Alcraft
closed
1 year ago
0
Visualise pipeline target - kept up-to-date
#46
Rachel-Alcraft
opened
1 year ago
2
Visualise the pipeline - now and target
#45
Rachel-Alcraft
opened
1 year ago
4
Extending test to include annotation
#44
Rachel-Alcraft
closed
1 year ago
0
take account of Ed's CS cluster nextflow issues
#43
robertvi
closed
1 year ago
0
Added submodules for the test workflow as a start to refactoring
#42
Rachel-Alcraft
closed
1 year ago
0
Gh032 myriad config
#41
Rachel-Alcraft
closed
1 year ago
0
What can we learn from nf-core?
#40
Rachel-Alcraft
opened
1 year ago
1
Working qsub config with platform specific config file for CS, new notes in main README
#39
robertvi
closed
1 year ago
0
Work out a nextflow config for automated qsub jobs on CS cluster
#38
robertvi
closed
1 year ago
5
Add check for gsutil and put in sub-module
#37
Rachel-Alcraft
closed
1 year ago
8
file header in test dataset file treated as data item
#36
robertvi
closed
1 year ago
3
minor changes to rjvs vm platform files
#35
robertvi
closed
1 year ago
0
Gh33 setup for rjvs vm
#34
robertvi
closed
1 year ago
1
create config for running and testing on my local machine
#33
robertvi
closed
1 year ago
0
Add Myriad config script
#32
Rachel-Alcraft
closed
1 year ago
0
added a platforms folder for site specific config
#31
robertvi
closed
1 year ago
0
Create a place to put config specific to the execution environment
#30
robertvi
closed
1 year ago
0
Abstract to sub-modules
#29
Rachel-Alcraft
opened
1 year ago
3
Processes abstracted into a shared file
#28
Rachel-Alcraft
closed
1 year ago
0
Improvements to basic workflow
#27
sillitoe
closed
1 year ago
0
GH022: load af archives to mongo
#26
sillitoe
closed
1 year ago
0
Abstract workflow to shared module
#25
Rachel-Alcraft
closed
1 year ago
1
GH023: add simple workflow to test nextflow
#24
sillitoe
closed
1 year ago
0
Create simplified nextflow workflow for initial testing on HPC
#23
sillitoe
closed
1 year ago
0
Load AF data to MongoDB
#22
sillitoe
opened
1 year ago
0
ARC CATH OSSS project objectives, deliverables and risks
#21
robertvi
opened
1 year ago
0
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