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UCSC-MedBook
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patient-care
Clincian facing portal showing pathways, signatures, and genes of interest
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Generalize the Limma/GSEA route for navigating folder-like routes
#53
mokolodi1
closed
7 years ago
2
Need a function to return Blob2 download URL given blob2 ID
#52
e-t-k
closed
7 years ago
2
Sample label definition file wrangler needs to be put back
#51
mokolodi1
closed
7 years ago
1
Limma/GSEA errors need explanation
#50
mokolodi1
closed
7 years ago
2
Take down Telescope
#49
mokolodi1
closed
7 years ago
3
Should print a log statement when someone logs in
#48
mokolodi1
closed
8 years ago
7
Display and allow download with unqualified sample labels (w/o study label)
#47
mokolodi1
opened
8 years ago
2
Clinical form description and data
#46
mokolodi1
opened
8 years ago
5
Comments, notification on share, provenance
#45
mokolodi1
opened
8 years ago
0
Administrators list for all objects
#44
mokolodi1
opened
8 years ago
0
Notifications
#43
mokolodi1
closed
7 years ago
1
Outlier analysis emails fail sometimes
#42
mokolodi1
opened
8 years ago
0
Cron job to delete old blobs
#41
mokolodi1
opened
8 years ago
0
Send to GSEA button on OutlierAnalysis page
#40
mokolodi1
closed
7 years ago
4
Update Wrangler to use new Blobs2
#39
mokolodi1
opened
8 years ago
1
Unclear why jobs failed
#38
mokolodi1
closed
8 years ago
0
Rename GeneSetCollections to GeneSetGroups
#37
mokolodi1
closed
7 years ago
1
[low priority] Collaboration summary page should list objects visible to that collaboration
#36
e-t-k
opened
8 years ago
0
Emails being put in spam folder
#35
mokolodi1
closed
7 years ago
1
user.getCollaborations() does a full graph traversal
#34
mokolodi1
opened
8 years ago
1
Add data set contents preview snippet to data set view page
#33
e-t-k
opened
8 years ago
4
Linked objects not deleted
#32
mokolodi1
closed
8 years ago
6
Automatically filter sample group before running outlier analysis
#31
mokolodi1
closed
8 years ago
2
Annotate outlier analysis with available pathology stains
#30
mokolodi1
closed
8 years ago
6
Create job to download filtered data using Yulia's scripts
#29
mokolodi1
closed
8 years ago
8
sample groups -- need to display sample list form queries
#28
e-t-k
opened
8 years ago
0
Sample Group query filter -- Only works when field values are strings
#27
e-t-k
closed
7 years ago
2
Sample Group query filter -- use Metadata table (or new Forms?) instead of sample CRF
#26
e-t-k
closed
8 years ago
2
Sample Group query filter -- it's not appropriately finding forms by sample labels
#25
e-t-k
closed
8 years ago
2
Add top 5% expressed transcripts to outlier analysis results
#24
e-t-k
closed
8 years ago
2
Outlier Analysis - Clicking 'remove filter' in 'Add a data set' triggers 'start analysis'
#23
e-t-k
closed
8 years ago
0
cannot create more than one sample label when creating dataset
#22
rbaertsch
closed
7 years ago
3
store outlier analysis computation for background cohorts and reuse
#21
e-t-k
closed
8 years ago
2
email requester when outlier analysis job completes
#20
e-t-k
closed
8 years ago
1
Sample descriptions - should be visible in data set page & also editable
#19
e-t-k
opened
8 years ago
1
Picker route for GSEA results not working on medbook.io
#18
mokolodi1
closed
8 years ago
1
Can only share with users whose last-used app is using the new collaborations code
#17
mokolodi1
closed
8 years ago
1
Need a custom sample group widget
#16
mokolodi1
closed
7 years ago
1
Share button forms are broken
#15
mokolodi1
closed
8 years ago
3
inconsistent Normalization fields in Outlier analysis / possible bug?
#14
e-t-k
closed
8 years ago
1
Add top-level medbook menu to patient care
#13
e-t-k
closed
8 years ago
1
allow filtering using clinical data in sample group creator
#12
rbaertsch
closed
8 years ago
1
sample group creator needs sample count
#11
rbaertsch
opened
8 years ago
1
Move Limma/GSEA create promise code to server
#10
mokolodi1
closed
7 years ago
3
"Already joined" goes away after a user is accepted to a collaboration but haven't refreshed yet
#9
mokolodi1
closed
7 years ago
2
Sending user names to client
#8
mokolodi1
opened
8 years ago
1
Turn on audit-argument-checks
#7
mokolodi1
closed
8 years ago
0
Collaboration admins can add anyone to a collaboration
#6
mokolodi1
closed
8 years ago
0
Implement UI to edit properties of a data set document, including adding/removing samples
#5
mokolodi1
opened
8 years ago
3
Implement UI to create a data set document
#4
mokolodi1
closed
8 years ago
3
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