search

UCSF-CBI / rstudio-server-controller

RStudio Server Controller (RSC) - A Tool for Launching a Personal Instance of the RStudio Server
https://github.com/UCSF-CBI/rstudio-server-controller
ISC License
4 stars 2 forks source link

Interactive Jobs Not Working #107

Closed ggruenhagen3 closed 3 months ago

ggruenhagen3 commented 3 months ago

Requesting an interactive job using srun is causing the terminal to hang and become unresponsive. Using CTRL+C does not work to stop the request and hitting ENTER does not produce a new line. After ~5+ minutes, I get a message like this:

srun: error: timeout waiting for task launch, started 0 of 1 tasks
srun: launch/slurm: launch_p_step_launch: StepId=35906.0 aborted before step completely launched.
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
srun: error: Timed out waiting for job step to complete

Expected behavior: a message that resources have been requested and then allocated, with the ability to stop this process at any point with CTRL+C Username: ggruenh Commands Tried: srun --partition=freecycle --nodes=1 --cpus-per-task=12 --mem=100G --time=9:00:00 --pty $SHELL and srun --nodes=1 --cpus-per-task=6 --mem=1G --time=00:02:00 --pty $SHELL

PS. The main issue isn't that I can't cancel an interactive job, it's that they are not working at the moment.

HenrikBengtsson commented 3 months ago

I see you re-posted at the C4-help issue tracker; that's a much better place, because this question seems to specific to that HPC environment