Closed Peter9192 closed 5 months ago
Maybe only list the log files as output? https://stackoverflow.com/questions/63467186/snakemake-how-to-create-rule-without-explicit-output-file-and-only-with-specif
@ClaireDons there are still some todo's here, but perhaps you can already try this out (see instructions in workflows/snakemake/README)? Then we can work on it together tomorrow, merging it with your work from #10 and before.
Thanks for the review! Let's merge and continue to work on it in follow-up PRs
I tried reproducing the workflow with snakemake. Got a bit further, but not complete yet. This again exposes how annoying WRF is with respect to input/output file configurability.
Snakemake is geared towards reproducing work in the same folder. Might need some tricks to make it create timestamped dirs for different experiments.