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VCCRI / Ularcirc

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
GNU General Public License v3.0
15 stars 7 forks source link

Couldn't visit Youtube #2

Closed gnilihzeux closed 4 years ago

gnilihzeux commented 4 years ago

Dear author,
It's very interesting of your Ularcirc, and I had read through your paper and installed your software.
But I suffered a issue that ORGANISM of part setup seems not work and report Error: invalid 'pattern' argument By the way, we couldn't visit demonstrates of Youtube from china, however there are more players of circRNA study in China.

davhum commented 4 years ago

Dear Jinwen,

Thanks for your message. Can you confirm which species you are working with and if the annotations databases are installed. For example if you are working with Human or mouse data can you tell me the output of the following commands:

p <- installed.packages() p[grep(pattern = "Hs",x = p[,1])] p[grep(pattern = "Mm",x = p[,1])]

For the video can you recommend a publically accessible website that you can access such content from.

Regards, Dave

gnilihzeux commented 4 years ago

Sorry for my late reply.

With your tips, the Ularcirc did work after some packages such as 'BSgenome' installed. I will try more to learn this softwares.

As for video website, there doesn't seems to be an international one. Our popular websites are all in Chinese, such as Bilibili.