What does DUP mean in the result?

WGLab / LinkedSV

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What does DUP mean in the result? #17

Closed woodoo46 closed 4 years ago

woodoo46 commented 4 years ago

Hi Li,

Does DUP mean the same thing in filtered_large_svcalls.bedpe and large_cnv.bedpe? For example, for SV, most callers refer TANDEM DUP as DUP; in CNV, DUP is NOT necessarily tandem dup, it could be an interspersed insertion.

Thanks for clarification.

fangli80 commented 4 years ago

In the filtered_large_svcalls.bedpe file, DUP means large tandem duplications, In the large_cnv.bedpe file, DUP means copy number agains detected from read depth.